Factsheet for VIT_05s0077g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	57.24	69.23
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	57.24	69.23
GSMUA_Achr5P15930_001	Banana	mitochondrion	56.89	68.8
GSMUA_Achr10P...	Banana	endoplasmic reticulum	56.54	68.38
KRH34786	Soybean	endoplasmic reticulum	55.48	67.67
KRH49483	Soybean	mitochondrion	53.36	67.11
AT3G66654.3	Thale cress	plastid	55.83	66.95
Bra029595.1-P	Field mustard	mitochondrion, plastid	55.48	66.53
KRG89165	Soybean	endoplasmic reticulum	53.36	65.65
Solyc10g083930.1.1	Tomato	nucleus	51.59	63.48
PGSC0003DMT400009946	Potato	mitochondrion	52.65	63.14
Solyc09g008410.2.1	Tomato	plastid	52.3	62.71
PGSC0003DMT400072698	Potato	mitochondrion, plastid	50.53	62.17
KXG36207	Sorghum	mitochondrion	50.18	60.94
Zm00001d021332_P002	Maize	mitochondrion	49.47	60.09
TraesCS2B01G255000.1	Wheat	mitochondrion	47.7	57.94
Os07t0476500-01	Rice	mitochondrion	48.06	57.87
TraesCS2D01G237600.1	Wheat	mitochondrion	47.0	57.08
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	55.12	53.42
HORVU2Hr1G054470.1	Barley	plastid	40.28	44.71
VIT_15s0048g01780.t01	Wine grape	cytosol	18.37	32.5
VIT_08s0007g02900.t01	Wine grape	cytosol	16.25	27.71
VIT_00s0513g00020.t01	Wine grape	cytosol	17.31	14.8
VIT_06s0061g01590.t01	Wine grape	cytosol	25.8	12.29
VIT_07s0129g00040.t01	Wine grape	cytosol	20.49	9.72
VIT_04s0008g01370.t01	Wine grape	cytosol	13.43	7.63
VIT_19s0027g01660.t01	Wine grape	nucleus	15.55	6.9

Protein Annotations

EntrezGene:100244755	wikigene:100244755	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CCB47972	ProteinID:CCB47972.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	UniProt:F6H725	EMBL:FN595246	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100244755	wikigene:LOC100244755	PFAM:PF00160
PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	SUPFAM:SSF50891	TMHMM:TMhelix
UniParc:UPI0002109256	ArrayExpress:VIT_05s0077g01040	EnsemblPlantsGene:VIT_05s0077g01040	EnsemblPlants:VIT_05s0077g01040.t01	RefSeq:XP_002277818	RefSeq:XP_002277818.1
SEG:seg	:	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:F6H725]

Coordinates

chr5:+:803301..807692

Molecular Weight (calculated)

32047.6 Da

IEP (calculated)

10.235

GRAVY (calculated)

-0.461

Length

283 amino acids

Sequence
(BLAST)

001: MNEFEKHRHL IPRKASQRTS HLYLFPTGDS TINGGSRTVT ARSNHRLPGM ARIKPQALLL QSKKKKGPTR ISITTIIFCN LVVVLVVFSL FATYRHWSNR
101: SRNQFQSGVS NVEENDGFVD SKRFDLPGYA ILNTSKGYIT VELYKDGSPE IVDKFLDLCQ KGYFKGMPFH HVIKNYVIQG GHSQGIGAAE DWTSKGKPHG
201: HLPLSPKHEA FMLGTSKTKQ DRKKFELFIT TAPIPDLNDK LIVFGRVIKG EDVVQEIEEV DTDEHYRPKS RIGIINVTLK REA

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.