CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
endoplasmic reticulum 1
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021332_P002	Maize	mitochondrion	96.57	96.57
Os07t0476500-01	Rice	mitochondrion	80.69	80.0
TraesCS2B01G255000.1	Wheat	mitochondrion	76.82	76.82
TraesCS2D01G237600.1	Wheat	mitochondrion	76.39	76.39
GSMUA_Achr10P...	Banana	endoplasmic reticulum	59.66	59.4
GSMUA_Achr5P15930_001	Banana	mitochondrion	59.66	59.4
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	58.8	58.55
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	58.37	58.12
HORVU2Hr1G054470.1	Barley	plastid	62.66	57.25
KRH34786	Soybean	endoplasmic reticulum	55.79	56.03
Bra029595.1-P	Field mustard	mitochondrion, plastid	56.65	55.93
AT3G66654.3	Thale cress	plastid	55.79	55.08
KRH49483	Soybean	mitochondrion	52.79	54.67
KRG89165	Soybean	endoplasmic reticulum	52.79	53.48
PGSC0003DMT400072698	Potato	mitochondrion, plastid	51.5	52.17
Solyc09g008410.2.1	Tomato	plastid	52.36	51.69
Solyc10g083930.1.1	Tomato	nucleus	50.64	51.3
PGSC0003DMT400009946	Potato	mitochondrion	51.93	51.27
VIT_05s0077g01040.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	60.94	50.18
KRG91995	Soybean	endoplasmic reticulum, mitochondrion, plastid	55.36	44.18
EER87777	Sorghum	cytosol	19.74	28.75
EES14084	Sorghum	cytosol	18.45	26.22
OQU80719	Sorghum	cytosol	27.47	9.89
EER92686	Sorghum	cytosol	21.46	8.46
EES03161	Sorghum	nucleus	15.88	7.21
EER88795	Sorghum	cytosol	16.31	6.8

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:A0A1B6QE56	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	ProteinID:KXG36204.1
ProteinID:KXG36205.1	ProteinID:KXG36206.1	EnsemblPlants:KXG36207	ProteinID:KXG36207	ProteinID:KXG36207.1	PFAM:PF00160
PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF200	EnsemblPlantsGene:SORBI_3002G300700
SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI00022070CB	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:67676865..67682043

Molecular Weight (calculated)

26337.0 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.226

Length

233 amino acids

Sequence
(BLAST)

001: MARIKPKQLL IQSKTKKAPS RISYSTIITW NLIVILIVLS LYATYSHWHQ RSAQDFEMEL HEAELAVRPV DPKMISRPRY AVMNTAKGPI TIEIYKDASA
101: GVVDRFIDLC KSNHFKGMPF RHIIKNFVIQ GGDFDFDGAA QEWITKAKAS GKNDLSPKHE AFMIGTAKNP NNKGFDLFIT TAPIPDLNDK LVVFGRVIKG
201: EDIVQEIEEV DTDEHYQPKA AIGIINIMLK QEP

Best Arabidopsis Sequence Match ( AT3G66654.4 )
(BLAST)

001: MAKIKPQALL NQSKKKKGPS RISISTIIVC NLVVAVVILS LVTTYRHWSQ RSRNTIEHET RSQRFEDTNT ASGQKTYDLP GFADINTSKG LITVELFKEG
101: SPEVVDKFLD LCQKDHFKGM PFQRVIKNYL VQAGHSPSSI PVEEWTAKGK LRGRLHIGPK HEAFMLGTPK NKGNNKDFEL LITTAPIPDL NDQLIVFGRV
201: LKGEDVVQEI EEVDTDEHFQ PKSPIGITGV VLKLET

Arabidopsis Description

CYP21-4Peptidyl-prolyl cis-trans isomerase CYP21-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C835]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.