CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0130500-01	Rice	cytosol	96.88	96.88
Zm00001d036035_P001	Maize	cytosol	96.25	96.25
TraesCS7A01G066500.1	Wheat	cytosol	91.25	91.25
TraesCS4A01G423000.1	Wheat	cytosol	91.25	91.25
TraesCS7D01G060700.1	Wheat	cytosol	90.62	90.62
VIT_15s0048g01780.t01	Wine grape	cytosol	89.38	89.38
Bra032657.1-P	Field mustard	cytosol	88.75	88.75
Solyc08g006090.2.1	Tomato	cytosol, nucleus	88.75	88.75
AT1G01940.1	Thale cress	cytosol	88.75	88.75
PGSC0003DMT400038471	Potato	cytosol	88.12	88.12
KRH76297	Soybean	cytosol	90.0	87.27
CDY38037	Canola	mitochondrion, plastid	88.12	73.06
EES14084	Sorghum	cytosol	46.88	45.73
KXG36207	Sorghum	mitochondrion	28.75	19.74
EER92686	Sorghum	cytosol	57.5	15.57
EES03161	Sorghum	nucleus	43.12	13.45
OQU80719	Sorghum	cytosol	48.12	11.9
EER88795	Sorghum	cytosol	40.0	11.45

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8068384	UniProt:C5Z3A7	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EER87777	ProteinID:EER87777	ProteinID:EER87777.1	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF147	EnsemblPlantsGene:SORBI_3010G021100	SUPFAM:SSF50891	unigene:Sbi.8815	UniParc:UPI0001A88E9C	RefSeq:XP_002436410.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:1705379..1706678

Molecular Weight (calculated)

17517.9 Da

IEP (calculated)

8.110

GRAVY (calculated)

-0.247

Length

160 amino acids

Sequence
(BLAST)

001: MSVTLHTNLG DIKCEVFCDQ VPRTAENFLA LCASGYYDGT VFHRNIKGFM IQGGDPTGTG KGGTSIWGTK FADEFRESLK HNARGIMSMA NSGPNTNGSQ
101: FFITYAKQPH LNGHYTVFAK VIHGFEVLDL MEKAQTGPGD RPLAEIRLNR VTIHANPLAL

Best Arabidopsis Sequence Match ( AT1G01940.1 )
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG

Arabidopsis Description

CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.