CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044297_P002	Maize	nucleus	94.54	88.5
Os01t0582400-01	Rice	extracellular	81.09	83.37
TraesCS3A01G209000.1	Wheat	nucleus	77.39	80.2
TraesCS3B01G239300.1	Wheat	nucleus	77.58	79.6
TraesCS3D01G211900.1	Wheat	nucleus	77.0	79.16
HORVU3Hr1G050400.5	Barley	cytosol, nucleus	55.17	72.38
KRH05304	Soybean	nucleus	62.96	65.52
VIT_04s0008g01370.t01	Wine grape	cytosol	63.35	65.26
CDX68936	Canola	nucleus	56.73	62.31
Solyc08g062700.2.1	Tomato	nucleus	58.87	61.38
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	66.47	60.35
CDX75321	Canola	nucleus	57.7	60.16
Bra011410.1-P	Field mustard	nucleus	57.89	60.12
AT4G33060.1	Thale cress	nucleus	57.5	58.53
EES14084	Sorghum	cytosol	16.18	50.61
EER87777	Sorghum	cytosol	13.45	43.12
EER88795	Sorghum	cytosol	21.64	19.86
EER92686	Sorghum	cytosol	18.52	16.07
KXG36207	Sorghum	mitochondrion	7.21	15.88
OQU80719	Sorghum	cytosol	15.01	11.9

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:C5XNU7	ncoils:Coil	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EES03161	ProteinID:EES03161	ProteinID:EES03161.1	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009506	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	ProteinID:KXG32778.1	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF152	EnsemblPlantsGene:SORBI_3003G197800	SUPFAM:SSF50891	unigene:Sbi.20969
UniParc:UPI0001A84DCB	RefSeq:XP_002458041.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:52338284..52342699

Molecular Weight (calculated)

58434.3 Da

IEP (calculated)

6.265

GRAVY (calculated)

-1.029

Length

513 amino acids

Sequence
(BLAST)

001: MSSVYVLEPP TKGKVVVQTT AGPLDIELWP KEAPKAARNF VQLCLEGYYD GTIFHRVIKD FLVQGGDPTG SGTGGESIYG APFADEFHSR LRFNHRGLVA
101: CANAGTPHSN GSQFFITLDR CDWLDKKNTI FGKVTGDSIF NLLSLADVET DKDDRPVYPQ KILSVEVLWD PFEDIVPRQL KKAESVAKAD TEVKPKKKAV
201: KQLNVLSFGD EVEEEENEAA ASVQAKIKSI HDVLDDPRFL KGEPEDVQLS KEQEEQKKDT VQSVRDALIS KKVESREQHH DPVSDDYPED ENEEDFDNRM
301: RSQILKKRRE LGDVPREPSR ADKPHHKDKE LSDHRSNIQH RRDNDEDDDQ EHELQKAKKL SLKKKGAGSE ASAERMSKAD ANLQLLNPAE QGRHLQKQKK
401: RRLQGREDET LAKLQKFKSS FLSKNLATNH VKEKNPSTDK VEKEDEEDDD YKGWHTNRLS FLPSSSKDGM ARKDDPDDYV VVDPLLEKGK EKFNKMQAKL
501: KRREREWAGR SLT

Best Arabidopsis Sequence Match ( AT4G33060.1 )
(BLAST)

001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA

Arabidopsis Description

CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.