CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011410.1-P	Field mustard	nucleus	97.0	91.7
CDX75321	Canola	nucleus	96.57	91.67
AT4G33060.1	Thale cress	nucleus	86.3	79.96
CDY69933	Canola	cytosol, nucleus	34.9	76.89
KRH05304	Soybean	nucleus	68.52	64.91
VIT_04s0008g01370.t01	Wine grape	cytosol	66.17	62.05
Solyc08g062700.2.1	Tomato	nucleus	65.1	61.79
TraesCS3B01G239300.1	Wheat	nucleus	60.81	56.8
TraesCS3A01G209000.1	Wheat	nucleus	60.17	56.77
EES03161	Sorghum	nucleus	62.31	56.73
Os01t0582400-01	Rice	extracellular	60.6	56.71
TraesCS3D01G211900.1	Wheat	nucleus	59.74	55.91
Zm00001d044297_P002	Maize	nucleus	61.88	52.74
HORVU3Hr1G050400.5	Barley	cytosol, nucleus	43.04	51.41
GSMUA_Achr8P05680_001	Banana	endoplasmic reticulum	60.81	50.27
CDX84155	Canola	cytosol	16.06	45.73
CDX75068	Canola	cytosol	16.06	45.73
CDY38037	Canola	mitochondrion, plastid	16.27	39.38
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	6.85	34.04
CDY72459	Canola	cytosol, extracellular, plastid	6.42	25.64
CDX83335	Canola	mitochondrion, plastid	7.92	16.02
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	7.92	15.81
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	7.71	15.38
CDY36499	Canola	cytosol	19.49	15.24
CDY08725	Canola	cytosol	19.27	15.08
CDY08708	Canola	cytosol	17.13	12.86
CDX99192	Canola	cytosol	17.13	12.86
CDY10512	Canola	nucleus	20.77	9.78

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078BVU4	EnsemblPlants:CDX68936	ProteinID:CDX68936	ProteinID:CDX68936.1
ncoils:Coil	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00130680001	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF152
SUPFAM:SSF50891	UniParc:UPI0004EE811B	SEG:seg	:	:	:

Description

BnaC01g05170D

Coordinates

chrLK031789:+:2112454..2115856

Molecular Weight (calculated)

52411.1 Da

IEP (calculated)

9.082

GRAVY (calculated)

-0.800

Length

467 amino acids

Sequence
(BLAST)

001: MSTIYVLEPP TKGKVIVNTT HGPIDIELWP KEAPKSVRNF VQLCLEGYFD DTIFHRVIPG FLVQGGDPTG SGTGGESIYG GVFADEFHSR LRFNHRGIVA
101: MANESSPNTN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIF NLLRLGEIDT GKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKASHAPVA EVKEPPKKPV
201: KKLNLLSFGE EAEEEEKELA AVKQKIKSSH DVLNDPRLLK AETTNKERNA SDSKEVLSVR EALGSKKENA QKEKSWPVSD PVGHNGDIPP NHYRKSNYSS
301: VKAPEESIKR SDVSSSEDEK PKMEKLSLKK KGIGSEAKAE RLENGDADLQ LYNASERARQ LHKLKKRRMQ GNEDAVLAKL EKFKQSIAAK PFGSSSEPVD
401: NMEDDVSDWK KVKLKFAPEH GKDKMRKEDP DAYVVVDPLL EKGKEKFNRM QAKQKRRERE WSGKSLA

Best Arabidopsis Sequence Match ( AT4G33060.1 )
(BLAST)

001: MSTVYVLEPP TKGKVIVNTT HGPIDVELWP KEAPKSVRNF VQLCLEGYFD NTIFHRVIPG FLVQGGDPTG SGTGGDSIYG GVFADEFHSR LRFSHRGIVA
101: MANASSPNSN GSQFFFTLDK CDWLDKKHTI FGKVTGDSIY NLLRLGEVDT SKDDRPLDPA PKILSVEVLW NPFEDIVPRV LAKTSEESAA EIKEPPTKPV
201: KKLNLLSFGE EAEEEEKELA VVKQKIKSSH DVLNDPRLLK AEASDKERNA SESKEVLSVR EALNAKKEAA QKDKSFSVSD TVGNSDDDDD GEDETKFDAK
301: MRNQVLSRRK EIGDTPSKPT QKKKSSSLKG REESTQRSDA VSSEDEKPRM EKLSLKKKGI GSEAKAEHME KGDTDLQLYN ASERARQLHK LKKRRLQGNE
401: DSVLAKLEKF KQSISAKPFT SSNEPVVLTS SSEPVDNKEE DLSDWKNVKL KFAPERGKDK MSRRDDPDAY MVVDPLLEKG KEKFNRMQAK QKRREREWSG
501: KSLA

Arabidopsis Description

CYP57Peptidyl-prolyl cis-trans isomerase CYP57 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q152]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.