CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032657.1-P	Field mustard	cytosol	82.38	99.38
AT1G01940.1	Thale cress	cytosol	81.35	98.12
VIT_15s0048g01780.t01	Wine grape	cytosol	78.76	95.0
Solyc08g006090.2.1	Tomato	cytosol, nucleus	77.72	93.75
PGSC0003DMT400038471	Potato	cytosol	77.2	93.12
KRH76297	Soybean	cytosol	78.24	91.52
Os06t0130500-01	Rice	cytosol	73.58	88.75
EER87777	Sorghum	cytosol	73.06	88.12
Zm00001d036035_P001	Maize	cytosol	71.5	86.25
TraesCS7A01G066500.1	Wheat	cytosol	69.95	84.38
TraesCS4A01G423000.1	Wheat	cytosol	69.95	84.38
TraesCS7D01G060700.1	Wheat	cytosol	69.43	83.75
CDX75068	Canola	cytosol	40.41	47.56
CDX84155	Canola	cytosol	40.41	47.56
CDY30664	Canola	endoplasmic reticulum, extracellular, nucleus	16.58	34.04
CDY72459	Canola	cytosol, extracellular, plastid	17.62	29.06
CDY24675	Canola	endoplasmic reticulum, mitochondrion, plastid	22.28	18.38
CDY05284	Canola	endoplasmic reticulum, mitochondrion, plastid	22.28	18.38
CDX83335	Canola	mitochondrion, plastid	21.76	18.18
CDX68936	Canola	nucleus	39.38	16.27
CDX75321	Canola	nucleus	39.38	15.45
CDY36499	Canola	cytosol	43.52	14.07
CDY08725	Canola	cytosol	43.01	13.9
CDX99192	Canola	cytosol	37.82	11.74
CDY08708	Canola	cytosol	37.82	11.74
CDY10512	Canola	nucleus	34.2	6.65
CDY69933	Canola	cytosol, nucleus	0.52	0.47

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078HJM2	UniProt:A0A078HJM2	EnsemblPlants:CDY38037	ProteinID:CDY38037
ProteinID:CDY38037.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00065100001	InterPro:IPR002130
InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF147	SUPFAM:SSF50891	UniParc:UPI0004EE027A	SEG:seg	:

Description

BnaCnng08980DPeptidyl-prolyl cis-trans isomerase CYP18-1 [Source:Projected from Arabidopsis thaliana (AT1G01940) UniProtKB/Swiss-Prot;Acc:Q9LPC7]

Coordinates

chrLK032414:+:207629..209146

Molecular Weight (calculated)

21022.0 Da

IEP (calculated)

9.512

GRAVY (calculated)

-0.437

Length

193 amino acids

Sequence
(BLAST)

001: MPNTTAGCRK RKEGRGRKST QSSSSFQASI TASMSVTLHT NLGDIKCEIF CDEVPKSAEN FLALCASEYY DGTIFHRNIK GFMIQGGDPT GTGKGGTSIW
101: GKKFNDEIRD SLKHNARGML SMANSGPNTN GSQFFITYAK QPHLNGLYTI FGKVIHGFEV LDIMEKTQTG AGDRPLAEIR LNRVTIHANP LAG

Best Arabidopsis Sequence Match ( AT1G01940.1 )
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG

Arabidopsis Description

CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.