Factsheet for PGSC0003DMT400038471

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006090.2.1	Tomato	cytosol, nucleus	99.38	99.38
Bra032657.1-P	Field mustard	cytosol	93.12	93.12
AT1G01940.1	Thale cress	cytosol	93.12	93.12
VIT_15s0048g01780.t01	Wine grape	cytosol	91.25	91.25
KRH76297	Soybean	cytosol	93.12	90.3
Os06t0130500-01	Rice	cytosol	88.75	88.75
EER87777	Sorghum	cytosol	88.12	88.12
Zm00001d036035_P001	Maize	cytosol	86.88	86.88
TraesCS4A01G423000.1	Wheat	cytosol	85.62	85.62
TraesCS7A01G066500.1	Wheat	cytosol	85.62	85.62
TraesCS7D01G060700.1	Wheat	cytosol	85.0	85.0
CDY38037	Canola	mitochondrion, plastid	93.12	77.2
PGSC0003DMT400022853	Potato	cytosol	46.88	45.73
PGSC0003DMT400056014	Potato	cytosol	30.0	26.67
PGSC0003DMT400009946	Potato	mitochondrion	29.38	19.92
PGSC0003DMT400072698	Potato	mitochondrion, plastid	28.12	19.57
PGSC0003DMT400055240	Potato	cytosol	56.25	15.1
PGSC0003DMT400069100	Potato	cytosol	30.62	14.29
PGSC0003DMT400019171	Potato	cytosol	46.88	12.08
PGSC0003DMT400011164	Potato	cytosol	10.62	9.19
PGSC0003DMT400011166	Potato	nucleus	16.25	8.9
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	4.38	3.63

Protein Annotations

EntrezGene:102601974	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	UniProt:M1B6X3	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400014848	PGSC:PGSC0003DMG400014848
EnsemblPlants:PGSC0003DMT400038471	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF147	SUPFAM:SSF50891	UniParc:UPI000295D10B	RefSeq:XP_006357029.1	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400014848]

Coordinates

chr8:-:2593490..2601802

Molecular Weight (calculated)

17498.0 Da

IEP (calculated)

7.600

GRAVY (calculated)

-0.297

Length

160 amino acids

Sequence
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPRTAENFLA LCSSDYYDGT IFHRNIKGFM IQGGDPTGTG KGGTSIWGKK FNDEIRESLK HNARGMLAMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGLEVLDL MEKTPTGPGD KPLAEIRLNR VTIHANPLAG

Best Arabidopsis Sequence Match ( AT1G01940.1 )
(BLAST)

001: MSVTLHTNLG DIKCEIFCDE VPKSAENFLA LCASGYYDGT IFHRNIKGFM IQGGDPKGTG KGGTSIWGKK FNDEIRDSLK HNARGMLSMA NSGPNTNGSQ
101: FFITYAKQPH LNGLYTIFGK VIHGFEVLDI MEKTQTGPGD RPLAEIRLNR VTIHANPLAG

Arabidopsis Description

CYP18-1Peptidyl-prolyl cis-trans isomerase CYP18-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.