Factsheet for PGSC0003DMT400011164

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000674
PGSC0003DMT400009249
PGSC0003DMT400010908
PGSC0003DMT400032709
PGSC0003DMT400048580
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400071859
PGSC0003DMT400079640
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	PGSC0003DMT400063701	AT1G09140.1	16497658
AT1G53720.1	PGSC0003DMT400060435	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400061471	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400010908	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400081835	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400000674	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400048580	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400009249	AT4G35800.1	16497658
AT1G53720.1	PGSC0003DMT400071859	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400079640	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400032709	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	63.24	60.62
PGSC0003DMT400011166	Potato	nucleus	68.11	43.15
PGSC0003DMT400069100	Potato	cytosol	64.32	34.69
PGSC0003DMT400056014	Potato	cytosol	33.51	34.44
TraesCS3D01G065600.1	Wheat	cytosol	48.11	26.65
AT1G53720.1	Thale cress	nucleus	67.57	24.7
TraesCS3A01G064900.1	Wheat	cytosol	53.51	24.44
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	25.95	23.3
Bra030819.1-P	Field mustard	cytosol	68.11	23.16
Solyc12g038010.1.1	Tomato	mitochondrion	24.32	22.84
Zm00001d036620_P001	Maize	nucleus	55.14	22.82
TraesCS4A01G064400.1	Wheat	nucleus	58.92	22.8
TraesCS4D01G241400.1	Wheat	nucleus	58.38	22.45
TraesCS4B01G241800.1	Wheat	nucleus	55.14	21.89
EER88795	Sorghum	cytosol	65.95	21.82
Os06t0670500-01	Rice	cytosol	66.49	21.81
TraesCS7D01G457200.1	Wheat	nucleus	65.41	21.65
TraesCS7B01G371900.1	Wheat	nucleus	65.41	21.65
TraesCS7A01G469800.1	Wheat	nucleus	65.41	21.65
HORVU7Hr1G107520.5	Barley	nucleus	64.86	21.47
GSMUA_Achr10P...	Banana	cytosol	63.78	21.3
HORVU1Hr1G015670.5	Barley	cytosol	27.57	21.07
VIT_19s0027g01660.t01	Wine grape	nucleus	72.43	21.0
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	27.03	20.75
KRH13056	Soybean	nucleus	70.27	20.54
KRG93223	Soybean	nucleus	69.73	20.16
Os06t0670400-00	Rice	cytosol	47.57	18.76
CDY10512	Canola	nucleus	67.57	12.6
PGSC0003DMT400022853	Potato	cytosol	10.81	12.2
PGSC0003DMT400038471	Potato	cytosol	9.19	10.62
PGSC0003DMT400072698	Potato	mitochondrion, plastid	7.03	5.65
PGSC0003DMT400009946	Potato	mitochondrion	6.49	5.08
PGSC0003DMT400055240	Potato	cytosol	12.97	4.03
PGSC0003DMT400019171	Potato	cytosol	10.27	3.06
CDY72459	Canola	cytosol, extracellular, plastid	0.0	0.0

Protein Annotations

Gene3D:2.40.100.10	Gene3D:3.30.70.330	MapMan:35.1	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR029000	UniProt:M0ZZ49	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400004369	PGSC:PGSC0003DMG400004369	EnsemblPlants:PGSC0003DMT400011164	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928	UniParc:UPI000295D0E8

Description

Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400004369]

Coordinates

chr12:+:52871285..52872420

Molecular Weight (calculated)

21081.4 Da

IEP (calculated)

4.362

GRAVY (calculated)

-0.529

Length

185 amino acids

Sequence
(BLAST)

001: MASAGENNLN ATKLRDTDLD NLDGKHTVSG EIGEGFDEAY VDDKGKPFQN IRIKHTHKLV DPFQLSYLIS YASKPKEEID VDVGLEDERD LPYAEIKPRV
101: LWVCNLNSVT EDEDLYTIFS RFGTVASAEI IRDRETGDSH CYGFIEFEDN EACELAYFKM INAVIDDRRI HVGFSQSVAK SWNQY

Best Arabidopsis Sequence Match ( AT1G53720.2 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGK SFFFSPPYGI SDLL

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.