Factsheet for PGSC0003DMT400081835

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000674
PGSC0003DMT400010908
PGSC0003DMT400016115
PGSC0003DMT400029666
PGSC0003DMT400032709
PGSC0003DMT400037966
PGSC0003DMT400048580
PGSC0003DMT400055636
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	PGSC0003DMT400029666	AT1G02840.1	18674533
AT3G13570.1	PGSC0003DMT400037966	AT1G02840.1	18674533
AT3G13570.1	PGSC0003DMT400063701	AT1G09140.1	18674533
AT3G13570.1	PGSC0003DMT400060435	AT2G37340.1	18674533
AT3G13570.1	PGSC0003DMT400061471	AT2G37340.1	18674533
AT3G13570.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT3G13570.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT3G13570.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT3G13570.1	PGSC0003DMT400000674	AT3G61860.1	18674533
AT3G13570.1	PGSC0003DMT400048580	AT3G61860.1	18674533
AT3G13570.1	PGSC0003DMT400016115	AT5G18810.1	18674533
AT3G13570.1	PGSC0003DMT400032709	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005820.2.1	Tomato	nucleus	96.37	94.84
PGSC0003DMT400010908	Potato	nucleus	75.81	67.14
GSMUA_Achr4P13560_001	Banana	nucleus	58.06	66.36
EER92211	Sorghum	nucleus	55.65	64.79
Zm00001d022243_P002	Maize	nucleus	54.44	64.59
Os03t0374575-01	Rice	nucleus	56.45	64.52
EER97602	Sorghum	nucleus	53.63	63.64
AT3G13570.1	Thale cress	nucleus	65.73	62.21
CDY24176	Canola	nucleus	64.92	61.69
Bra039394.1-P	Field mustard	nucleus	65.32	61.6
CDY07084	Canola	nucleus	65.32	61.6
Zm00001d047401_P001	Maize	nucleus	53.23	61.11
GSMUA_Achr9P21660_001	Banana	nucleus	60.08	60.82
Os07t0633200-02	Rice	nucleus	51.61	60.09
TraesCS2D01G160400.1	Wheat	nucleus	49.19	59.51
TraesCS2A01G155100.1	Wheat	nucleus	49.19	59.51
TraesCS2B01G180200.1	Wheat	nucleus	49.19	58.94
CDY24043	Canola	nucleus	66.53	58.1
HORVU2Hr1G028210.9	Barley	nucleus	48.39	57.69
CDY33060	Canola	nucleus	66.13	57.14
CDY26110	Canola	mitochondrion, nucleus	68.15	56.9
AT1G55310.3	Thale cress	nucleus	68.15	56.52
Zm00001d029629_P001	Maize	nucleus	10.08	55.56
CDY08236	Canola	nucleus	68.55	53.46
Bra011910.1-P	Field mustard	nucleus	68.55	53.29
Zm00001d004470_P001	Maize	nucleus	23.79	53.15
Zm00001d005285_P001	Maize	nucleus	29.44	51.05
Zm00001d019443_P002	Maize	nucleus	21.77	50.94
Bra037991.1-P	Field mustard	nucleus	49.19	49.39
Zm00001d029305_P001	Maize	nucleus	32.26	48.78
KRH38014	Soybean	endoplasmic reticulum, nucleus	55.24	47.9
Zm00001d010881_P001	Maize	nucleus	32.66	44.26
CDY02449	Canola	nucleus	39.92	42.67
Zm00001d016504_P001	Maize	nucleus	12.9	42.67
Zm00001d012570_P002	Maize	extracellular	25.4	38.65
Zm00001d005739_P004	Maize	cytosol	16.53	37.27
CDY10571	Canola	nucleus	47.18	34.72
PGSC0003DMT400016115	Potato	nucleus	36.69	34.21
Bra030870.1-P	Field mustard	plastid	24.19	33.15
Zm00001d015189_P001	Maize	nucleus	23.39	32.95
Zm00001d043759_P001	Maize	cytosol	19.76	31.82
PGSC0003DMT400032709	Potato	nucleus	28.23	27.56
PGSC0003DMT400045694	Potato	nucleus	28.63	27.52
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	23.39	26.85
Zm00001d010176_P001	Maize	cytosol	11.69	25.44
Zm00001d004722_P001	Maize	cytosol	10.08	23.58

Protein Annotations

EntrezGene:102600835	MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1D543	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400032132	PGSC:PGSC0003DMG400032132	EnsemblPlants:PGSC0003DMT400081835	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI000296E7B3	RefSeq:XP_006354141.1	SEG:seg	:	:	:

Description

Serine/arginine-rich protein [Source:PGSC_GENE;Acc:PGSC0003DMG400032132]

Coordinates

chr1:+:1405032..1411492

Molecular Weight (calculated)

28479.0 Da

IEP (calculated)

11.796

GRAVY (calculated)

-1.544

Length

248 amino acids

Sequence
(BLAST)

001: MRRRSYSPSP QRGYGRRGRS PSPRGRYGGH SSDGPTSLLV RNLRHDCRPE DLRRPFGQFG PVKDIYLPKD YYTGEPRGFG FVQFVDPADA ADAKYQMDGQ
101: GFQGRQLTVV FAEENRKKPT EMRSRERSGS HRSSRSHDRR RTPPSRYARA GSHSRDYSPK RRQYSRSVSP EEKRYSRERS YSRSPPCDLS PPPHNGSRSR
201: SQTPVRERPP YNGSPRSRSR SPVRRERSPV RGHSRSPSRS PGCAPYSP

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.