CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011910.1-P	Field mustard	nucleus	99.06	98.75
CDY26110	Canola	mitochondrion, nucleus	88.36	94.61
CDY33060	Canola	nucleus	73.9	81.88
CDY24043	Canola	nucleus	72.96	81.69
AT1G55310.3	Thale cress	nucleus	71.38	75.92
CDY24176	Canola	nucleus	61.01	74.33
CDY07084	Canola	nucleus	61.32	74.14
PGSC0003DMT400081835	Potato	nucleus	53.46	68.55
Solyc01g005820.2.1	Tomato	nucleus	53.14	67.06
CDY08473	Canola	nucleus	40.25	62.44
PGSC0003DMT400010908	Potato	nucleus	53.14	60.36
CDY01078	Canola	nucleus	40.88	54.62
CDY02449	Canola	nucleus	34.91	47.84
KRH38014	Soybean	endoplasmic reticulum, nucleus	42.45	47.2
CDY02941	Canola	nucleus	35.53	40.65
CDX76092	Canola	plastid	35.85	40.43
CDY10571	Canola	nucleus	40.88	38.58
CDX84503	Canola	nucleus	19.5	22.88
CDY43799	Canola	vacuole	15.41	15.17

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:A0A078F4C6	UniProt:A0A078F4C6	EnsemblPlants:CDY08236	ProteinID:CDY08236
ProteinID:CDY08236.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00125559001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDF420
SEG:seg	:	:	:	:	:

Description

BnaA05g13830DBnaA05g13830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4C6]

Coordinates

chrLK031984:+:275375..277731

Molecular Weight (calculated)

36722.1 Da

IEP (calculated)

12.274

GRAVY (calculated)

-1.573

Length

318 amino acids

Sequence
(BLAST)

001: MRGRSYTPSP PRGSYGRRDR KSPSPRGGGR YGARSVDLPT SLLVRNLRHD CRQEDLRRLF EQFGPLKDIY MPRDYYTGDP RGFGFVQFVD PADAAEAKYQ
101: MDGYHLLGRE LTVVFAEENR KKPTEMRARE RGGGRSIRSR DRRRSPPRYY SRSPPPRRGR SRSRSGDYYS PPSTRHHSRS ISPREERYAR GRSYSRSPAY
201: NGSRGRSVTP ARSKRRSISR SPSPGRSISP SPRRNVSRSP SPRRSRSNTP VPARGRSPRR KRRSNTPIPT RSSPKRKRSN TPIPARSRSP KRKRSNTPIP
301: ARNRSQREEE YEDRSPSQ

Best Arabidopsis Sequence Match ( AT1G55310.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ

Arabidopsis Description

SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.