Factsheet for Solyc01g005820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc01g096180.2.1
Solyc01g099810.2.1
Solyc01g105140.2.1
Solyc05g054920.2.1
Solyc06g009060.2.1
Solyc09g005980.2.1
Solyc09g075090.1.1
Solyc09g098390.2.1
Solyc10g009330.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	Solyc06g009060.2.1	AT1G02840.1	18674533
AT3G13570.1	Solyc09g075090.1.1	AT1G02840.1	18674533
AT3G13570.1	Solyc01g099810.2.1	AT1G09140.1	18674533
AT3G13570.1	Solyc05g054920.2.1	AT2G37340.1	18674533
AT3G13570.1	Solyc09g005980.2.1	AT2G37340.1	18674533
AT3G13570.1	Solyc09g098390.2.1	AT2G43370.1	15987817
AT3G13570.1	Solyc01g005820.2.1	AT3G13570.1	18674533
AT3G13570.1	Solyc01g096180.2.1	AT3G61860.1	18674533
AT3G13570.1	Solyc10g009330.2.1	AT3G61860.1	18674533
AT3G13570.1	Solyc01g080660.2.1	AT5G18810.1	18674533
AT3G13570.1	Solyc01g105140.2.1	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081835	Potato	nucleus	94.84	96.37
GSMUA_Achr4P13560_001	Banana	nucleus	57.94	67.28
EER92211	Sorghum	nucleus	55.95	66.2
Zm00001d022243_P002	Maize	nucleus	54.76	66.03
EER97602	Sorghum	nucleus	53.97	65.07
Os03t0374575-01	Rice	nucleus	55.95	64.98
CDY24176	Canola	nucleus	64.68	62.45
GSMUA_Achr9P21660_001	Banana	nucleus	60.71	62.45
Bra039394.1-P	Field mustard	nucleus	65.08	62.36
CDY07084	Canola	nucleus	65.08	62.36
Zm00001d047401_P001	Maize	nucleus	53.17	62.04
TraesCS2D01G160400.1	Wheat	nucleus	50.4	61.95
TraesCS2A01G155100.1	Wheat	nucleus	50.4	61.95
AT3G13570.1	Thale cress	nucleus	64.29	61.83
Os07t0633200-02	Rice	nucleus	51.98	61.5
TraesCS2B01G180200.1	Wheat	nucleus	50.4	61.35
HORVU2Hr1G028210.9	Barley	nucleus	49.6	60.1
CDY24043	Canola	nucleus	65.48	58.1
CDY33060	Canola	nucleus	65.08	57.14
AT1G55310.3	Thale cress	nucleus	67.46	56.86
CDY26110	Canola	mitochondrion, nucleus	66.67	56.57
Zm00001d029629_P001	Maize	nucleus	9.92	55.56
Zm00001d004470_P001	Maize	nucleus	23.41	53.15
CDY08236	Canola	nucleus	67.06	53.14
Bra011910.1-P	Field mustard	nucleus	67.06	52.98
Zm00001d019443_P002	Maize	nucleus	21.83	51.89
Zm00001d005285_P001	Maize	nucleus	29.37	51.75
Bra037991.1-P	Field mustard	nucleus	48.41	49.39
Zm00001d029305_P001	Maize	nucleus	31.75	48.78
KRH38014	Soybean	endoplasmic reticulum, nucleus	54.76	48.25
Zm00001d010881_P001	Maize	nucleus	32.14	44.26
Zm00001d016504_P001	Maize	nucleus	13.1	44.0
CDY02449	Canola	nucleus	39.29	42.67
Solyc01g080660.2.1	Tomato	nucleus	25.79	39.16
Zm00001d012570_P002	Maize	extracellular	25.0	38.65
Zm00001d005739_P004	Maize	cytosol	15.87	36.36
CDY10571	Canola	nucleus	47.62	35.61
Bra030870.1-P	Field mustard	plastid	24.21	33.7
Zm00001d015189_P001	Maize	nucleus	23.41	33.52
Zm00001d043759_P001	Maize	cytosol	20.24	33.12
Solyc01g105140.2.1	Tomato	nucleus	27.78	27.56
Solyc04g074040.2.1	Tomato	nucleus	28.17	27.52
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	23.02	26.85
Zm00001d010176_P001	Maize	cytosol	11.51	25.44
Zm00001d004722_P001	Maize	cytosol	9.92	23.58

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	UniProt:K4ASE8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc01g005820.2	EnsemblPlants:Solyc01g005820.2.1	UniParc:UPI0001E24442	SEG:seg

Description

No Description!

Coordinates

chr1:+:537499..541732

Molecular Weight (calculated)

29042.7 Da

IEP (calculated)

11.925

GRAVY (calculated)

-1.580

Length

252 amino acids

Sequence
(BLAST)

001: MRRRSYSPSP PRGYGRRGRS PSPRGRYAGH GRDGPTSLLV RNLRHDCRPE DLRRPFGQFG PVKDIYLPKD YYTGEPRGFG FVQFVDPADA ADAKYQMDGQ
101: GFQGRQLTVV FAEENRKKPT EMRSRERSGS HRSSRSYDRR RTPPSRYARP GSHSRDYSPK RRPYSRSVSP EEKRYSRERS YSRSPPRDLS PPPHNGSRSR
201: SQTPVREHPP YNGSPRSRSR SPVRRERSPV RGHSRSPSRS RSRSPGCAPY SP

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.