CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92211
EER92984
EER94870
EER97037
EER97602
EES00292
EES10309
EES11769
EES16196
EES18924
KXG21152
KXG21387
KXG21391
KXG21829
KXG32406
KXG36736
KXG39239
KXG39307
OQU77498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	EER94870	AT1G02840.1	18674533
AT3G13570.1	KXG21829	AT1G02840.1	18674533
AT3G13570.1	KXG32406	AT1G02840.1	18674533
AT3G13570.1	EER94870	AT1G09140.1	18674533
AT3G13570.1	KXG21829	AT1G09140.1	18674533
AT3G13570.1	KXG32406	AT1G09140.1	18674533
AT3G13570.1	EES00292	AT2G37340.1	18674533
AT3G13570.1	EES18924	AT2G37340.1	18674533
AT3G13570.1	KXG21152	AT2G37340.1	18674533
AT3G13570.1	KXG21387	AT2G37340.1	18674533
AT3G13570.1	KXG21391	AT2G37340.1	18674533
AT3G13570.1	OQU77498	AT2G37340.1	18674533
AT3G13570.1	EER97037	AT2G43370.1	15987817
AT3G13570.1	EER92211	AT3G13570.1	18674533
AT3G13570.1	EER97602	AT3G13570.1	18674533
AT3G13570.1	EES10309	AT3G55460.1	18674533
AT3G13570.1	EES16196	AT3G55460.1	18674533
AT3G13570.1	EER92984	AT3G61860.1	18674533
AT3G13570.1	EES11769	AT3G61860.1	18674533
AT3G13570.1	KXG39307	AT5G18810.1	18674533
AT3G13570.1	KXG36736	AT5G64200.2	18674533
AT3G13570.1	KXG39239	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047401_P001	Maize	nucleus	86.85	85.65
Zm00001d019443_P002	Maize	nucleus	40.85	82.08
Zm00001d029629_P001	Maize	nucleus	16.9	80.0
Os03t0374575-01	Rice	nucleus	81.22	79.72
Zm00001d005285_P001	Maize	nucleus	53.52	79.72
EER97602	Sorghum	nucleus	70.89	72.25
Zm00001d016504_P001	Maize	nucleus	25.35	72.0
Zm00001d004470_P001	Maize	nucleus	37.09	71.17
GSMUA_Achr4P13560_001	Banana	nucleus	67.61	66.36
Zm00001d010881_P001	Maize	nucleus	56.81	66.12
Bra034794.1-P	Field mustard	nucleus	61.97	63.77
CDY08473	Canola	nucleus	60.56	62.93
GSMUA_Achr9P21660_001	Banana	nucleus	72.3	62.86
VIT_06s0004g00710.t01	Wine grape	nucleus	68.54	59.59
KRH16958	Soybean	nucleus	69.01	59.04
KRH72576	Soybean	nucleus	69.01	58.1
Zm00001d029305_P001	Maize	nucleus	44.13	57.32
Solyc01g005820.2.1	Tomato	nucleus	66.2	55.95
PGSC0003DMT400081835	Potato	nucleus	64.79	55.65
CDY01078	Canola	nucleus	61.97	55.46
AT3G13570.1	Thale cress	nucleus	64.32	52.29
Zm00001d015189_P001	Maize	nucleus	43.19	52.27
PGSC0003DMT400010908	Potato	nucleus	65.73	50.0
Zm00001d005739_P004	Maize	cytosol	24.88	48.18
AT1G55310.3	Thale cress	nucleus	65.73	46.82
KRH38014	Soybean	endoplasmic reticulum, nucleus	60.09	44.76
Zm00001d043759_P001	Maize	cytosol	31.92	44.16
Zm00001d012570_P002	Maize	extracellular	33.33	43.56
EES10309	Sorghum	nucleus	51.64	40.74
EES16196	Sorghum	nucleus	49.3	40.08
KXG39307	Sorghum	nucleus	40.38	35.68
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	32.39	31.94
Zm00001d010176_P001	Maize	cytosol	16.9	31.58
Zm00001d004722_P001	Maize	cytosol	14.08	28.3
KXG39239	Sorghum	nucleus	30.99	27.97
KXG36736	Sorghum	nucleus	32.39	27.6
KXG25727	Sorghum	nucleus	29.11	22.71

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EntrezGene:8080764	UniProt:C5WYN3	EnsemblPlants:EER92211	ProteinID:EER92211
ProteinID:EER92211.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	EMBL:KC425082	EMBL:KC425083	ProteinID:KXG39285.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF11	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
EnsemblPlantsGene:SORBI_3001G358000	SUPFAM:SSF54928	unigene:Sbi.3152	UniParc:UPI0001A821DE	RefSeq:XP_002465213.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:64775449..64778841

Molecular Weight (calculated)

24773.1 Da

IEP (calculated)

11.901

GRAVY (calculated)

-1.478

Length

213 amino acids

Sequence
(BLAST)

001: MGRSYDYSPS PPRGYRRRTR SPSPRGRYGG RGRDLPTSLL VRNLRRDCRP DDLRRPFGKF GRVKDIYLPK DYYTREPKGF GFIQYFDPED ASDAKYHMDG
101: QMLLGREITV VFAEENRKKP SDMRARERMS GRSRSYDRRL RSRSPGYSDS PRGRSRSHSP SHSPAPKRKH YSRSPSPRPR ERSMSRSPAD SRSRSVSPSV
201: SRSPRRQRSQ GSV

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.