CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0486200-02	Rice	nucleus	82.05	77.51
Zm00001d052803_P004	Maize	nucleus	81.69	74.09
Zm00001d031269_P002	Maize	nucleus	86.45	68.6
GSMUA_Achr2P00600_001	Banana	nucleus	61.17	67.61
GSMUA_Achr5P05380_001	Banana	nucleus	60.81	65.1
KXG36736	Sorghum	nucleus	57.51	62.8
KXG39239	Sorghum	nucleus	50.92	58.9
EER97602	Sorghum	nucleus	23.08	30.14
EER92211	Sorghum	nucleus	22.71	29.11
EES16196	Sorghum	nucleus	27.11	28.24
EES10309	Sorghum	nucleus	25.64	25.93
KXG39307	Sorghum	nucleus	20.88	23.65

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0016020	GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677
EMBL:KC425075	EnsemblPlants:KXG25727	ProteinID:KXG25727	ProteinID:KXG25727.1	UniProt:M1HJ21	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF42	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	EnsemblPlantsGene:SORBI_3007G224900	SUPFAM:SSF54928	UniParc:UPI000220717D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:65242109..65246764

Molecular Weight (calculated)

31528.7 Da

IEP (calculated)

12.213

GRAVY (calculated)

-1.633

Length

273 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIRDTFSLLV LNISFRTTAD DLYPLFERYG KVVDVFIPRD RRTGDSRGFA FVRYKYADEA QKAIDRLDGR NVDGRNIMVQ FAKYGPNAEP
101: IQKGRVKEGA EKSRDRSRSR SPRPRNRDRD HRRRSRSRSR SRERHGRDRD RDYRRRSRSR SRSPSSSPDR KSHRRARDDG KRKSRSKSRS KSRSRSRSKS
201: MSRSRSRSRS YHSASPARRS ASPHKSPPPR RSPTPEKHTN GKDSPLSRSV SPSPKRASSH SPGSDGKNVE KVD

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.