Factsheet for Os08t0486200-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25727	Sorghum	nucleus	77.51	82.05
GSMUA_Achr2P00600_001	Banana	nucleus	59.52	69.64
GSMUA_Achr5P05380_001	Banana	nucleus	61.25	69.41
Zm00001d052803_P004	Maize	nucleus	71.97	69.1
Zm00001d031269_P002	Maize	nucleus	74.05	62.21
Os03t0388000-01	Rice	mitochondrion, nucleus	43.25	60.98
Os07t0623300-01	Rice	nucleus	55.36	58.18
Os03t0374575-01	Rice	nucleus	22.15	29.49
Os02t0252100-02	Rice	nucleus	26.64	29.06
Os07t0633200-02	Rice	nucleus	20.07	27.23
Os12t0572400-01	Rice	nucleus	24.57	27.0
Os03t0363800-01	Rice	nucleus	21.45	25.51
Os11t0704700-01	Rice	nucleus	24.91	14.09

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4345884	EMBL:AK064030	EMBL:AK103676	ProteinID:BAD09319.1
ProteinID:BAF24008.1	ProteinID:BAT05979.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0016020	GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0486200	EnsemblPlants:Os08t0486200-02	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF42	UniProt:Q6ZDR7	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000023ADB6	RefSeq:XP_015650066.1	SEG:seg	:

Description

Similar to Splicing factor SC35. (Os08t0486200-01);Similar to Splicing factor SC35. (Os08t0486200-02);Non-protein coding transcript. (Os08t0486200-03)

Coordinates

chr8:-:24040156..24043292

Molecular Weight (calculated)

33542.9 Da

IEP (calculated)

12.302

GRAVY (calculated)

-1.698

Length

289 amino acids

Sequence
(BLAST)

001: MSHFGRSGPP DIRDTFSLLV LNISFRTTAD DLFPLFDRYG KVVDVFIPRD RRTGDSRGFA FVRYKYAEEA QKAIDRLDGR NVDGRNIMVQ FAKYGPNAEP
101: IRKGRIIEEV EKSRDRSRSR SPRRRHRDDH RDRERRGRSR SRSRERHGRD RDRDHRRHSR SRSRSRSRSR SRSLSPDYKN RRRGRDDDKR RSKSKSKSKS
201: RSKSRSRSKS RSKSRSRSRS RSRSRSFHSA SPTRHSASPP LKGSTPRRSP ARNGSPEKET NGKGSPPSRS VSPSPQRAGS RSPGSDDKE

Best Arabidopsis Sequence Match ( AT5G64200.1 )
(BLAST)

001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE

Arabidopsis Description

SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.