Factsheet for Os03t0374575-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os02t0252100-02
Os03t0285900-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os04t0118900-01
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0513700-01
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	Os01t0316600-01	AT1G02840.1	18674533
AT3G13570.1	Os03t0344100-02	AT1G02840.1	18674533
AT3G13570.1	Os05t0364600-01	AT1G02840.1	18674533
AT3G13570.1	Os07t0673500-01	AT1G02840.1	18674533
AT3G13570.1	Os01t0316600-01	AT1G09140.1	18674533
AT3G13570.1	Os03t0344100-02	AT1G09140.1	18674533
AT3G13570.1	Os05t0364600-01	AT1G09140.1	18674533
AT3G13570.1	Os07t0673500-01	AT1G09140.1	18674533
AT3G13570.1	Os01t0155600-01	AT2G37340.1	18674533
AT3G13570.1	Os03t0285900-01	AT2G37340.1	18674533
AT3G13570.1	Os05t0120100-01	AT2G37340.1	18674533
AT3G13570.1	Os05t0162600-01	AT2G37340.1	18674533
AT3G13570.1	Os09t0513700-01	AT2G43370.1	15987817
AT3G13570.1	Os03t0374575-01	AT3G13570.1	18674533
AT3G13570.1	Os07t0633200-02	AT3G13570.1	18674533
AT3G13570.1	Os02t0252100-02	AT3G55460.1	18674533
AT3G13570.1	Os11t0704700-01	AT3G55460.1	18674533
AT3G13570.1	Os12t0572400-01	AT3G55460.1	18674533
AT3G13570.1	Os04t0118900-01	AT3G61860.1	18674533
AT3G13570.1	Os03t0363800-01	AT5G18810.1	18674533
AT3G13570.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92211	Sorghum	nucleus	79.72	81.22
Zm00001d047401_P001	Maize	nucleus	76.96	77.31
Os07t0633200-02	Rice	nucleus	71.43	72.77
Zm00001d019443_P002	Maize	nucleus	35.02	71.7
Zm00001d029629_P001	Maize	nucleus	14.75	71.11
Zm00001d005285_P001	Maize	nucleus	45.62	69.23
GSMUA_Achr4P13560_001	Banana	nucleus	67.74	67.74
GSMUA_Achr9P21660_001	Banana	nucleus	75.58	66.94
Bra034794.1-P	Field mustard	nucleus	62.67	65.7
CDY08473	Canola	nucleus	61.29	64.88
Zm00001d004470_P001	Maize	nucleus	31.8	62.16
VIT_06s0004g00710.t01	Wine grape	nucleus	70.05	62.04
KRH16958	Soybean	nucleus	69.59	60.64
Zm00001d016504_P001	Maize	nucleus	20.74	60.0
KRH72576	Soybean	nucleus	69.59	59.68
Zm00001d010881_P001	Maize	nucleus	48.85	57.92
CDY01078	Canola	nucleus	63.13	57.56
PGSC0003DMT400081835	Potato	nucleus	64.52	56.45
Solyc01g005820.2.1	Tomato	nucleus	64.98	55.95
AT3G13570.1	Thale cress	nucleus	65.9	54.58
Zm00001d029305_P001	Maize	nucleus	41.01	54.27
PGSC0003DMT400010908	Potato	nucleus	64.06	49.64
AT1G55310.3	Thale cress	nucleus	66.82	48.49
KRH38014	Soybean	endoplasmic reticulum, nucleus	61.75	46.85
Zm00001d015189_P001	Maize	nucleus	37.33	46.02
Zm00001d005739_P004	Maize	cytosol	22.12	43.64
Os02t0252100-02	Rice	nucleus	53.0	43.4
Zm00001d012570_P002	Maize	extracellular	32.26	42.94
Os12t0572400-01	Rice	nucleus	51.61	42.59
Zm00001d043759_P001	Maize	cytosol	28.57	40.26
Os03t0363800-01	Rice	nucleus	41.47	37.04
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	32.72	32.87
Zm00001d010176_P001	Maize	cytosol	16.59	31.58
Os03t0388000-01	Rice	mitochondrion, nucleus	27.65	29.27
Zm00001d004722_P001	Maize	cytosol	14.29	29.25
Os07t0623300-01	Rice	nucleus	33.64	26.55
Os08t0486200-02	Rice	nucleus	29.49	22.15
Os11t0704700-01	Rice	nucleus	42.4	18.0

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EntrezGene:9268085	ProteinID:AAP46199.1	ProteinID:ABF96207.1	ProteinID:BAS84392.1
ProteinID:EEE59134.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0374575	EnsemblPlants:Os03t0374575-01	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF11	UniProt:Q7Y171	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00001A2F08	RefSeq:XP_015628079.1	SEG:seg	:	:

Description

Similar to RNA recognition motif family protein, expressed. (Os03t0374575-01)

Coordinates

chr3:-:14751365..14754907

Molecular Weight (calculated)

25590.9 Da

IEP (calculated)

11.664

GRAVY (calculated)

-1.534

Length

217 amino acids

Sequence
(BLAST)

001: MGRGYDYGPS PPREYRRRAR SPSPRGRYGG RDRDLPTSLL VRNLRRDCRP DDLRRPFGKF GRVKDIYLPR DYYTGEPRGF GFIQYYDPED AADAKYHMDG
101: QILLGREVTV VFAEENRKKP SEMRARERVG SRDRSYDRRS RSPRYSRSRS PVYSPRSRSR SRSYSPAPKR KHYSRSPARR ERSLSRSPAD SRSRSRSLSD
201: DRRSKSPDRE RSLSVSR

Best Arabidopsis Sequence Match ( AT1G55310.2 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA

Arabidopsis Description

SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.