Factsheet for Os12t0572400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0155600-01
Os01t0316600-01
Os01t0590900-01
Os01t0667800-01
Os02t0252100-02
Os02t0732200-01
Os03t0285900-01
Os03t0344100-02
Os03t0363800-01
Os03t0374575-01
Os03t0681900-01
Os04t0118900-01
Os05t0120100-01
Os05t0162600-01
Os05t0364600-01
Os05t0564200-01
Os06t0670400-00
Os06t0670500-01
Os07t0623300-01
Os07t0633200-02
Os07t0673500-01
Os09t0491756-01
Os09t0513700-01
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G55460.1	Os01t0316600-01	AT1G02840.1	18674533
AT3G55460.1	Os03t0344100-02	AT1G02840.1	18674533
AT3G55460.1	Os05t0364600-01	AT1G02840.1	18674533
AT3G55460.1	Os07t0673500-01	AT1G02840.1	18674533
AT3G55460.1	Os01t0316600-01	AT1G09140.1	18674533
AT3G55460.1	Os03t0344100-02	AT1G09140.1	18674533
AT3G55460.1	Os05t0364600-01	AT1G09140.1	18674533
AT3G55460.1	Os07t0673500-01	AT1G09140.1	18674533
AT3G55460.1	Os06t0670400-00	AT1G53720.1	16497658
AT3G55460.1	Os06t0670500-01	AT1G53720.1	16497658
AT3G55460.1	Os02t0732200-01	AT1G71020.1	21798944
AT3G55460.1	Os01t0155600-01	AT2G37340.1	18674533
AT3G55460.1	Os03t0285900-01	AT2G37340.1	18674533
AT3G55460.1	Os05t0120100-01	AT2G37340.1	18674533
AT3G55460.1	Os05t0162600-01	AT2G37340.1	18674533
AT3G55460.1	Os09t0513700-01	AT2G43370.1	15987817
AT3G55460.1	Os09t0513700-01	AT2G43370.1	21798944
AT3G55460.1	Os03t0374575-01	AT3G13570.1	18674533
AT3G55460.1	Os07t0633200-02	AT3G13570.1	18674533
AT3G55460.1	Os02t0252100-02	AT3G55460.1	18674533
AT3G55460.1	Os11t0704700-01	AT3G55460.1	18674533
AT3G55460.1	Os12t0572400-01	AT3G55460.1	18674533
AT3G55460.1	Os02t0252100-02	AT3G55460.1	21798944
AT3G55460.1	Os11t0704700-01	AT3G55460.1	21798944
AT3G55460.1	Os12t0572400-01	AT3G55460.1	21798944
AT3G55460.1	Os04t0118900-01	AT3G61860.1	18674533
AT3G55460.1	Os01t0590900-01	AT4G32660.1	21798944
AT3G55460.1	Os03t0681900-01	AT5G04280.1	21798944
AT3G55460.1	Os03t0363800-01	AT5G18810.1	18674533
AT3G55460.1	Os01t0667800-01	AT5G42820.1	21798944
AT3G55460.1	Os05t0564200-01	AT5G42820.1	21798944
AT3G55460.1	Os09t0491756-01	AT5G42820.1	21798944
AT3G55460.1	Os07t0623300-01	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0252100-02	Rice	nucleus	92.4	91.7
EES16196	Sorghum	nucleus	88.59	88.93
TraesCS5D01G093200.1	Wheat	nucleus, plastid	85.17	75.68
TraesCS5B01G087000.2	Wheat	nucleus, plastid	85.17	75.68
TraesCS5A01G079000.1	Wheat	nucleus	84.79	75.34
HORVU5Hr1G021180.4	Barley	nucleus, plastid	83.65	73.09
GSMUA_Achr1P17340_001	Banana	nucleus	69.2	67.91
GSMUA_Achr8P34280_001	Banana	nucleus	68.44	66.91
KRH15102	Soybean	nucleus	64.26	62.36
KRH73034	Soybean	nucleus	65.02	61.96
Zm00001d030739_P002	Maize	mitochondrion, nucleus, plastid	82.89	59.08
CDY02941	Canola	nucleus	61.98	58.63
AT3G55460.1	Thale cress	mitochondrion, nucleus	58.17	58.4
CDX76092	Canola	plastid	61.98	57.8
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	61.98	55.25
Os03t0374575-01	Rice	nucleus	42.59	51.61
VIT_13s0019g01060.t01	Wine grape	nucleus	69.2	51.56
Os07t0633200-02	Rice	nucleus	38.78	47.89
Os03t0363800-01	Rice	nucleus	32.32	34.98
Os03t0388000-01	Rice	mitochondrion, nucleus	21.67	27.8
Os07t0623300-01	Rice	nucleus	27.76	26.55
Os11t0704700-01	Rice	nucleus	49.81	25.64
Os08t0486200-02	Rice	nucleus	27.0	24.57

Protein Annotations

EntrezGene:107275752	MapMan:16.4.6.2	Gene3D:3.30.70.330	ProteinID:ABA99674.1	EMBL:AK065531	ProteinID:BAF30110.1
ProteinID:BAT17750.1	ProteinID:EEE53467.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os12g0572400	EnsemblPlants:Os12t0572400-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF1	UniProt:Q2QNB0	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000680DA7	RefSeq:XP_015620444.1	SEG:seg	:

Description

Similar to SC35-like splicing factor SCL30, 30 kD. (Os12t0572400-01);Similar to Pre-mRNA splicing factor (Fragment). (Os12t0572400-02)

Coordinates

chr12:-:23589647..23593482

Molecular Weight (calculated)

30187.8 Da

IEP (calculated)

11.368

GRAVY (calculated)

-1.574

Length

263 amino acids

Sequence
(BLAST)

001: MRRYSPPYRS PPRRGYGGRG RSPPRRGYGG RREQGSGSLL VRNIPLSCRG EDLRVPFERF GPVRDVYLPK DYYSGEPRGF AFVEFVDPYD ASEAQYHMNR
101: QVFFGREITV VLAAESRKRP EEMRSRARVR GYSGNEGRRS SYYGRSRSRS RSPHYRGRPR SRSYSPAPRR RDDYSASPPR KDTHPTKSPR RQPKEHDEEK
201: KRRSYSPASR DGDPRDADNG YEKRSPPPDS DGSPPHRRSP RHSSGSPPGS RSRSADVSPA RSD

Best Arabidopsis Sequence Match ( AT3G55460.1 )
(BLAST)

001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR

Arabidopsis Description

SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.