Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- plastid 2
- nucleus 2
- mitochondrion 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02941 | Canola | nucleus | 89.69 | 84.53 |
| CDX76092 | Canola | plastid | 90.84 | 84.4 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 90.08 | 80.0 |
| HORVU6Hr1G061320.1 | Barley | mitochondrion | 35.88 | 66.67 |
| KRH15102 | Soybean | nucleus | 64.89 | 62.73 |
| KRH73034 | Soybean | nucleus | 64.12 | 60.87 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 61.83 | 60.22 |
| EES16196 | Sorghum | nucleus | 58.78 | 58.78 |
| Os12t0572400-01 | Rice | nucleus | 58.4 | 58.17 |
| EES10309 | Sorghum | nucleus | 59.92 | 58.15 |
| Os02t0252100-02 | Rice | nucleus | 57.25 | 56.6 |
| HORVU7Hr1G118660.4 | Barley | nucleus | 48.85 | 56.39 |
| HORVU2Hr1G073490.2 | Barley | cytosol, nucleus | 35.88 | 56.29 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 56.87 | 55.6 |
| HORVU4Hr1G003820.8 | Barley | nucleus | 55.73 | 54.89 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 56.11 | 54.65 |
| TraesCS4A01G289300.1 | Wheat | nucleus | 55.34 | 54.51 |
| HORVU4Hr1G058060.2 | Barley | mitochondrion, nucleus | 47.71 | 54.35 |
| TraesCS4D01G022700.1 | Wheat | nucleus | 56.11 | 54.04 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 57.63 | 52.43 |
| HORVU6Hr1G034010.3 | Barley | nucleus | 50.38 | 50.38 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 56.87 | 50.34 |
| TraesCS5D01G093200.1 | Wheat | nucleus, plastid | 56.87 | 50.34 |
| TraesCS5A01G079000.1 | Wheat | nucleus | 56.49 | 50.0 |
| HORVU5Hr1G021180.4 | Barley | nucleus, plastid | 56.49 | 49.17 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 64.12 | 47.59 |
| AT5G18810.1 | Thale cress | nucleus | 37.02 | 41.1 |
| AT3G13570.1 | Thale cress | nucleus | 40.84 | 40.84 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 56.11 | 39.84 |
| AT1G55310.3 | Thale cress | nucleus | 41.98 | 36.79 |
| AT5G64200.2 | Thale cress | nucleus | 29.77 | 25.74 |
| Os11t0704700-01 | Rice | nucleus | 40.08 | 20.55 |
| TraesCS4A01G176000.13 | Wheat | nucleus | 48.85 | 14.07 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 47.33 | 13.67 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 47.71 | 11.43 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 33.59 | 11.08 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | EntrezGene:824712 | ProteinID:AEE79387.1 | EMBL:AJ293798 | ArrayExpress:AT3G55460 |
| EnsemblPlantsGene:AT3G55460 | RefSeq:AT3G55460 | TAIR:AT3G55460 | RefSeq:AT3G55460-TAIR-G | EnsemblPlants:AT3G55460.1 | TAIR:AT3G55460.1 |
| EMBL:AY086131 | EMBL:AY099649 | EMBL:AY128836 | ProteinID:CAB75904.1 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0016607 | GO:GO:0042802 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_567021.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | UniProt:Q8L3X8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | Symbol:SCL30 | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000009E6EB | SEG:seg | : | : | : |
Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
Coordinates
chr3:+:20560802..20563885
Molecular Weight (calculated)
29569.1 Da
IEP (calculated)
11.752
GRAVY (calculated)
-1.463
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.