Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G176000.13 | Wheat | nucleus | 89.67 | 78.24 |
| TraesCS4D01G136700.4 | Wheat | nucleus | 89.04 | 77.95 |
| HORVU4Hr1G027820.11 | Barley | nucleus, plastid | 74.94 | 54.39 |
| EES10309 | Sorghum | nucleus | 13.1 | 38.52 |
| KRH15102 | Soybean | nucleus | 12.85 | 37.64 |
| GSMUA_Achr8P34280_001 | Banana | nucleus | 12.72 | 37.55 |
| KRH73034 | Soybean | nucleus | 12.97 | 37.32 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 12.47 | 36.8 |
| CDY02941 | Canola | nucleus | 12.59 | 35.97 |
| CDX76092 | Canola | plastid | 12.72 | 35.82 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 13.35 | 35.81 |
| GSMUA_Achr1P17340_001 | Banana | nucleus | 11.96 | 35.45 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 12.72 | 34.24 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 12.34 | 34.03 |
| AT3G55460.1 | Thale cress | mitochondrion, nucleus | 11.08 | 33.59 |
| VIT_13s0019g01060.t01 | Wine grape | nucleus | 13.1 | 29.46 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 5.92 | 22.71 |
| Os11t0704700-01 | Rice | nucleus | 12.72 | 19.77 |
| TraesCS4B01G156200.1 | Wheat | nucleus | 5.79 | 19.25 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 6.17 | 18.01 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G141700.1 | EnsemblPlantsGene:TraesCS4B01G141700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SUPFAM:SSF54928 | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:187349381..187358681
Molecular Weight (calculated)
91712.3 Da
IEP (calculated)
10.308
GRAVY (calculated)
-1.927
Length
794 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKDYYSGEP KGFAFIEFFD SHDASEAQYH MNCKLFCGRE IKVEPATDKR KRPEDMRRRT GVRVHSGSKG RDLSRHGRSR SRSHSRSPRQ GGRDRSRSQS
101: PASRRRGDYS ASPKQNHQDN QKNMTTIRSW DPVLLVVEVN VMTLTMIPVI LYMARRRATR DYSAAPKRKE ACQTKSPRQT NEHDEDKKRI SFSPDRNNRR
201: DADNGHNERD DYSTSSKRKG ERLSKSLRLS KEHDKDKKRR SYSRDDRSDC RDADNSFKER RATTDDKRSC PRQRSPRPSS GSHSRRRDAY SASPKGKEER
301: REQSPRQSKE HDKHRKRRSN TPDDRNDCHG ADHSHNEMQG DCSTSPKIKE ERQAKSSRES EEYNKDTKGR SCAPHDRNDR HDAVNGSRDS NLHVDRKPVT
401: PDDEGSHACR RSPRPSSGSR SRKRDDCSAS PKKKEECRAK SPKQSIEYKD EKRSCTSDDI NGRHNAVNCY KKKRDGYSAS PKIKEECRAE SPRPTKERED
501: NDGIDRTDAD NGYNERRAGP DSASQKRMEK PPQAKSQSQS KEYDNGKKNG SCTHDDGKEC RDADNGSKER KDYSAAGKRK EERLASLPRQ SKEHDEHKKR
601: GSYTRDDRND LRDADNGSKE RKDYSTGKRK EERQASLPRQ SKEHDEHKKR GSYTPDDRDD PRDADNGSKE RRNDYSTSRK RMEDYMAKSS RQSKEHDDDK
701: KRGLYTPDDR SHRSNADNGS RERGDFSASG RRKEEYRGKS PRQLKEHGDN KKRGSYTPAD RNDLRDVNNG CNEKLATHDG SRSPCPGRRS PRPS
101: PASRRRGDYS ASPKQNHQDN QKNMTTIRSW DPVLLVVEVN VMTLTMIPVI LYMARRRATR DYSAAPKRKE ACQTKSPRQT NEHDEDKKRI SFSPDRNNRR
201: DADNGHNERD DYSTSSKRKG ERLSKSLRLS KEHDKDKKRR SYSRDDRSDC RDADNSFKER RATTDDKRSC PRQRSPRPSS GSHSRRRDAY SASPKGKEER
301: REQSPRQSKE HDKHRKRRSN TPDDRNDCHG ADHSHNEMQG DCSTSPKIKE ERQAKSSRES EEYNKDTKGR SCAPHDRNDR HDAVNGSRDS NLHVDRKPVT
401: PDDEGSHACR RSPRPSSGSR SRKRDDCSAS PKKKEECRAK SPKQSIEYKD EKRSCTSDDI NGRHNAVNCY KKKRDGYSAS PKIKEECRAE SPRPTKERED
501: NDGIDRTDAD NGYNERRAGP DSASQKRMEK PPQAKSQSQS KEYDNGKKNG SCTHDDGKEC RDADNGSKER KDYSAAGKRK EERLASLPRQ SKEHDEHKKR
601: GSYTRDDRND LRDADNGSKE RKDYSTGKRK EERQASLPRQ SKEHDEHKKR GSYTPDDRDD PRDADNGSKE RRNDYSTSRK RMEDYMAKSS RQSKEHDDDK
701: KRGLYTPDDR SHRSNADNGS RERGDFSASG RRKEEYRGKS PRQLKEHGDN KKRGSYTPAD RNDLRDVNNG CNEKLATHDG SRSPCPGRRS PRPS
001: MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
101: AGEAQRSMNR RSFAGREITV VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS YSPAPRRRGG PPRGEEDENY
201: SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR GGRAVSRSPS GSRSRSVEVS PR
Arabidopsis Description
SCL30Serine/arginine-rich SC35-like splicing factor SCL30 [Source:UniProtKB/Swiss-Prot;Acc:Q8L3X8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.