Factsheet for TraesCS4A01G288500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G237400.1
TraesCS2B01G259400.1
TraesCS2D01G238900.1
TraesCS4A01G176000.13
TraesCS4A01G288500.1
TraesCS4A01G289300.1
TraesCS4B01G025600.1
TraesCS4B01G026400.1
TraesCS4B01G141700.1
TraesCS4D01G022700.1
TraesCS4D01G023800.2
TraesCS4D01G136700.4
TraesCS5A01G079000.1
TraesCS5B01G087000.2
TraesCS5D01G093200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	TraesCS4A01G176000.13	AT3G55460.1	21798944
AT5G04280.1	TraesCS4A01G289300.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4B01G025600.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4B01G141700.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4D01G022700.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS4D01G136700.4	AT3G55460.1	21798944
AT5G04280.1	TraesCS5A01G079000.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS5B01G087000.2	AT3G55460.1	21798944
AT5G04280.1	TraesCS5D01G093200.1	AT3G55460.1	21798944
AT5G04280.1	TraesCS2A01G237400.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS2B01G259400.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS2D01G238900.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS4A01G288500.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS4B01G026400.1	AT5G04280.1	21798944
AT5G04280.1	TraesCS4D01G023800.2	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G023800.2	Wheat	nucleus	99.68	99.37
TraesCS4B01G026400.1	Wheat	nucleus	99.05	98.43
Os03t0681900-01	Rice	nucleus	80.44	82.79
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	75.08	80.13
KXG37841	Sorghum	nucleus	79.81	80.06
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	77.29	78.78
GSMUA_Achr4P22370_001	Banana	nucleus	64.04	65.27
GSMUA_Achr2P12550_001	Banana	nucleus	44.16	62.5
TraesCS2A01G237400.1	Wheat	nucleus	57.41	62.12
KRG90774	Soybean	nucleus	51.1	58.06
VIT_13s0019g05080.t01	Wine grape	nucleus	50.47	57.55
PGSC0003DMT400043581	Potato	nucleus	48.27	56.46
KRH35987	Soybean	nucleus	45.74	50.17
VIT_08s0007g04870.t01	Wine grape	cytosol	39.12	50.0
Solyc03g071560.2.1	Tomato	nucleus	48.27	48.73
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	52.68	48.41
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	47.32	48.39
Bra005798.1-P	Field mustard	nucleus	46.69	48.37
CDY11283	Canola	nucleus	46.69	48.37
TraesCS6A01G216500.1	Wheat	nucleus	24.29	47.53
CDX80910	Canola	nucleus	38.17	46.36
PGSC0003DMT400079815	Potato	nucleus	46.06	45.91
TraesCS4A01G293000.1	Wheat	plastid	23.34	45.68
AT1G60650.2	Thale cress	nucleus	41.32	44.86
CDY34132	Canola	nucleus	35.96	44.71
Solyc11g008210.1.1	Tomato	nucleus	41.01	44.07
TraesCS5A01G015000.1	Wheat	nucleus	21.45	40.0
TraesCS4A01G355700.1	Wheat	nucleus	24.61	36.97
TraesCS7A01G326800.1	Wheat	nucleus	27.44	36.71
TraesCS3A01G422600.1	Wheat	nucleus	16.4	30.06
TraesCS3A01G428400.1	Wheat	mitochondrion	18.93	26.55
TraesCS1A01G405700.1	Wheat	mitochondrion	9.15	26.13
TraesCS4A01G100000.1	Wheat	mitochondrion	8.52	25.96
TraesCS3A01G534200.1	Wheat	mitochondrion	8.83	25.69
TraesCS5A01G460900.1	Wheat	mitochondrion	23.34	24.26
TraesCS2A01G296100.1	Wheat	mitochondrion	10.41	23.74
TraesCS3A01G418900.1	Wheat	mitochondrion	10.41	22.6
TraesCS7A01G307200.1	Wheat	plastid	10.73	22.22
TraesCS2A01G212000.1	Wheat	mitochondrion	9.46	21.43
TraesCS4A01G099700.1	Wheat	plastid	11.04	20.35
TraesCS2A01G176700.1	Wheat	mitochondrion	20.82	9.0
TraesCS6A01G292000.1	Wheat	plastid	10.09	8.25

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	EnsemblPlantsGene:TraesCS4A01G288500
EnsemblPlants:TraesCS4A01G288500.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:593333205..593337537

Molecular Weight (calculated)

34506.0 Da

IEP (calculated)

9.225

GRAVY (calculated)

-1.339

Length

317 amino acids

Sequence
(BLAST)

001: MAGKEDSRIF VGGLSFHTDE RKLEDAFRRF GKVVDTQIML ERHTNRHRGF GFVTFSDPRA VETAINDMHN KELDGRTISV NRAEPKMQTD DTRYSSGGGG
101: DRGDYRGGKG DGPPPGNCFE CGRAGHWARD CPNPGGGRSG RFPSKFSGGG GRGDRFSGSD RFGDRYVDDR YDGGRYGGYR EPIDSRDRYD GGRDRYASDR
201: YPSGGDRFGA DRYGAAPDRY APSGGGGGYG RERERSYERD GIRGGGAYDR SGPRGGASYD RDGPRGGIGG GYDRDGPRGG GADYGSGGPS RYEGGGYRER
301: PAPYDRPRGG GRFDDRY

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.