Factsheet for TraesCS3A01G422600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G457900.1	Wheat	plastid	90.17	89.14
TraesCS3D01G417800.1	Wheat	plastid	89.6	88.07
HORVU3Hr1G093400.1	Barley	plastid	84.39	86.9
Os01t0916600-01	Rice	mitochondrion	63.01	72.67
Zm00001d012052_P001	Maize	mitochondrion, plastid	61.27	67.95
EES01954	Sorghum	plastid	56.65	66.67
TraesCS4A01G293000.1	Wheat	plastid	39.31	41.98
TraesCS5A01G015000.1	Wheat	nucleus	41.04	41.76
TraesCS6A01G216500.1	Wheat	nucleus	38.73	41.36
TraesCS3A01G428400.1	Wheat	mitochondrion	45.09	34.51
TraesCS4A01G100000.1	Wheat	mitochondrion	20.23	33.65
TraesCS2A01G296100.1	Wheat	mitochondrion	26.59	33.09
TraesCS2A01G212000.1	Wheat	mitochondrion	26.59	32.86
TraesCS3A01G534200.1	Wheat	mitochondrion	19.65	31.19
TraesCS3A01G418900.1	Wheat	mitochondrion	26.01	30.82
TraesCS1A01G405700.1	Wheat	mitochondrion	19.65	30.63
TraesCS5A01G460900.1	Wheat	mitochondrion	49.13	27.87
TraesCS7A01G307200.1	Wheat	plastid	24.28	27.45
TraesCS4A01G355700.1	Wheat	nucleus	31.21	25.59
TraesCS4A01G099700.1	Wheat	plastid	25.43	25.58
TraesCS7A01G326800.1	Wheat	nucleus	31.21	22.78
TraesCS2A01G237400.1	Wheat	nucleus	32.95	19.45
TraesCS4A01G288500.1	Wheat	nucleus	30.06	16.4
TraesCS2A01G176700.1	Wheat	mitochondrion	44.51	10.5
TraesCS6A01G292000.1	Wheat	plastid	21.97	9.79

Protein Annotations

EnsemblPlants:TraesCS3A01G422600.1	EnsemblPlantsGene:TraesCS3A01G422600	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR44202
PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:16.12.5.2

Description

No Description!

Coordinates

chr3A:+:663574882..663576133

Molecular Weight (calculated)

16933.5 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.254

Length

173 amino acids

Sequence
(BLAST)

001: MAALIKLGSL LRQSALASSA STGSAPALFN AARFMCAGQP AGGNKLFVGG LAWATDDHSL KEAFQSFGEV VEARVITDRE TGRSRGFGFV SFANEADADS
101: AAKGMDGQEL AGRNVRVNFA NERPSGGGGF SRGGGGYGGG GGFGGGGGYG GGGGGYGGGG RGGGGYGGDR EAF

Best Arabidopsis Sequence Match ( AT3G23830.1 )
(BLAST)

001: MAFCNKLSGI LRQGVSQSSN GPVTSMLGSL RYMSSKLFVG GLSWGTDDSS LKQAFTSFGE VTEATVIADR ETGRSRGFGF VSFSCEDSAN NAIKEMDGKE
101: LNGRQIRVNL ATERSSAPRS SFGGGGGYGG GGGGGY

Arabidopsis Description

RBG4GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.