Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G323600.1 | Wheat | nucleus | 96.2 | 99.13 |
| TraesCS7B01G227500.2 | Wheat | nucleus | 95.78 | 98.7 |
| HORVU7Hr1G078140.5 | Barley | nucleus | 95.78 | 98.7 |
| KXG24163 | Sorghum | nucleus | 73.42 | 79.82 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 62.03 | 69.67 |
| PGSC0003DMT400076497 | Potato | nucleus | 56.54 | 65.37 |
| KRH42209 | Soybean | endoplasmic reticulum | 47.68 | 64.2 |
| KRH58335 | Soybean | nucleus | 55.7 | 63.46 |
| PGSC0003DMT400045627 | Potato | nucleus | 54.85 | 60.75 |
| Bra025205.1-P | Field mustard | nucleus | 54.43 | 55.6 |
| CDX83617 | Canola | nucleus | 54.01 | 55.17 |
| CDY13632 | Canola | nucleus | 54.85 | 54.39 |
| Solyc10g047130.1.1 | Tomato | nucleus | 54.85 | 54.39 |
| CDY48990 | Canola | nucleus | 55.7 | 54.32 |
| CDY52166 | Canola | nucleus | 55.7 | 54.32 |
| Bra032933.1-P | Field mustard | nucleus | 55.7 | 54.32 |
| AT3G26420.1 | Thale cress | nucleus | 53.16 | 51.43 |
| VIT_18s0166g00180.t01 | Wine grape | mitochondrion | 57.81 | 48.07 |
| Solyc01g104840.2.1 | Tomato | nucleus | 43.46 | 46.19 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 31.22 | 45.68 |
| TraesCS4A01G293000.1 | Wheat | plastid | 31.22 | 45.68 |
| GSMUA_Achr5P26170_001 | Banana | nucleus, peroxisome, plasma membrane | 29.96 | 42.26 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 29.54 | 41.18 |
| GSMUA_Achr8P07840_001 | Banana | mitochondrion, nucleus, plasma membrane | 31.22 | 38.74 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 39.66 | 32.08 |
| TraesCS3A01G422600.1 | Wheat | nucleus | 22.78 | 31.21 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 14.35 | 31.19 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 13.5 | 30.77 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 13.5 | 28.83 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 36.71 | 27.44 |
| TraesCS7A01G307200.1 | Wheat | plastid | 17.3 | 26.8 |
| TraesCS2A01G212000.1 | Wheat | mitochondrion | 15.61 | 26.43 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 14.77 | 25.18 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 14.77 | 23.97 |
| TraesCS3A01G428400.1 | Wheat | mitochondrion | 21.94 | 23.01 |
| TraesCS5A01G460900.1 | Wheat | mitochondrion | 29.11 | 22.62 |
| TraesCS4A01G099700.1 | Wheat | plastid | 16.03 | 22.09 |
| TraesCS2A01G176700.1 | Wheat | mitochondrion | 27.85 | 9.0 |
| TraesCS6A01G292000.1 | Wheat | plastid | 13.92 | 8.51 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR45429 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS7A01G326800 | EnsemblPlants:TraesCS7A01G326800.1 |
| InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7A:-:474789006..474790310
Molecular Weight (calculated)
25918.8 Da
IEP (calculated)
7.885
GRAVY (calculated)
-1.443
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDADDYRCF VGSLSWNTTD VDLKDAFGKF GRVTETKVVL DKFSGRSRGF GFVTFDDKKA MEEAVEAMNG IDLDGRNITV ERAQPQGSGR DRDGDRDYRG
101: GGDRYGGGRD FGGGRGGGRG GGGDCYKCGK PGHFARECPS GDGGDRYGSR DDRYSSRDDR YSSRDDRYSS RDDRYGGRDG ARDDKYGGSN GSSRYGPDRG
201: GDRYSGSRDG GSRGSGGGDR YSRDRSGPYD RRSRDEY
101: GGDRYGGGRD FGGGRGGGRG GGGDCYKCGK PGHFARECPS GDGGDRYGSR DDRYSSRDDR YSSRDDRYSS RDDRYGGRDG ARDDKYGGSN GSSRYGPDRG
201: GDRYSGSRDG GSRGSGGGDR YSRDRSGPYD RRSRDEY
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
Arabidopsis Description
RZ1AGlycine-rich RNA-binding protein RZ1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LIN3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.