Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G018500.1 | Wheat | nucleus | 99.38 | 96.99 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 97.53 | 96.93 |
| Solyc10g051390.1.1 | Tomato | nucleus | 51.85 | 71.19 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 74.07 | 70.59 |
| Solyc10g051380.1.1 | Tomato | nucleus | 54.94 | 68.46 |
| CDY59763 | Canola | nucleus | 70.37 | 68.26 |
| Bra031210.1-P | Field mustard | nucleus | 70.37 | 67.86 |
| CDY70933 | Canola | nucleus | 70.37 | 67.86 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 55.56 | 67.67 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 69.75 | 66.47 |
| PGSC0003DMT400084266 | Potato | extracellular | 66.05 | 66.46 |
| CDY72366 | Canola | nucleus | 69.75 | 66.08 |
| Bra030284.1-P | Field mustard | nucleus | 68.52 | 66.07 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 64.2 | 65.82 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 62.96 | 65.81 |
| CDY15876 | Canola | nucleus | 68.52 | 65.68 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 65.43 | 65.43 |
| Bra001972.1-P | Field mustard | nucleus | 66.05 | 65.24 |
| KRH29453 | Soybean | nucleus | 56.17 | 65.0 |
| PGSC0003DMT400001879 | Potato | cytosol | 70.37 | 64.77 |
| AT2G21660.1 | Thale cress | nucleus | 70.37 | 64.77 |
| KRH29452 | Soybean | nucleus | 62.35 | 64.74 |
| Solyc01g109660.2.1 | Tomato | extracellular | 69.75 | 64.57 |
| AT4G39260.1 | Thale cress | nucleus | 67.28 | 64.5 |
| CDY42616 | Canola | cytosol | 62.35 | 64.33 |
| KRH29451 | Soybean | nucleus | 67.9 | 64.33 |
| Bra010693.1-P | Field mustard | nucleus | 65.43 | 64.24 |
| CDX90323 | Canola | plastid | 65.43 | 64.24 |
| Bra011869.1-P | Field mustard | cytosol | 63.58 | 63.58 |
| CDY46213 | Canola | nucleus | 47.53 | 63.11 |
| PGSC0003DMT400083014 | Potato | nucleus | 64.2 | 62.65 |
| PGSC0003DMT400084258 | Potato | nucleus | 64.2 | 62.65 |
| PGSC0003DMT400084290 | Potato | nucleus | 64.2 | 62.65 |
| CDY41969 | Canola | cytosol | 49.38 | 62.5 |
| CDX71276 | Canola | nucleus | 66.05 | 62.21 |
| KRH29454 | Soybean | nucleus | 63.58 | 60.59 |
| CDY12133 | Canola | cytosol | 58.02 | 59.49 |
| KRH51528 | Soybean | nucleus | 66.67 | 59.34 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 58.02 | 58.02 |
| KRH60842 | Soybean | mitochondrion | 64.2 | 56.22 |
| TraesCS3A01G422600.1 | Wheat | nucleus | 41.98 | 39.31 |
| TraesCS4A01G355700.1 | Wheat | nucleus | 45.06 | 34.6 |
| TraesCS3A01G534200.1 | Wheat | mitochondrion | 21.6 | 32.11 |
| TraesCS7A01G326800.1 | Wheat | nucleus | 45.68 | 31.22 |
| TraesCS3A01G428400.1 | Wheat | mitochondrion | 43.21 | 30.97 |
| TraesCS1A01G405700.1 | Wheat | mitochondrion | 19.75 | 28.83 |
| TraesCS4A01G100000.1 | Wheat | mitochondrion | 17.9 | 27.88 |
| TraesCS2A01G212000.1 | Wheat | mitochondrion | 24.07 | 27.86 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 23.46 | 27.34 |
| TraesCS5A01G460900.1 | Wheat | mitochondrion | 50.62 | 26.89 |
| TraesCS2A01G237400.1 | Wheat | nucleus | 45.06 | 24.91 |
| TraesCS7A01G307200.1 | Wheat | plastid | 23.46 | 24.84 |
| TraesCS4A01G288500.1 | Wheat | nucleus | 45.68 | 23.34 |
| TraesCS3A01G418900.1 | Wheat | mitochondrion | 20.99 | 23.29 |
| TraesCS4A01G099700.1 | Wheat | plastid | 22.84 | 21.51 |
| TraesCS2A01G176700.1 | Wheat | mitochondrion | 50.0 | 11.05 |
| TraesCS6A01G292000.1 | Wheat | plastid | 20.37 | 8.51 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G293000.1 | EnsemblPlantsGene:TraesCS4A01G293000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR44202 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12399 | MapMan:16.7.2 | MapMan:16.12.5.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:595359708..595360304
Molecular Weight (calculated)
15884.9 Da
IEP (calculated)
5.219
GRAVY (calculated)
-0.751
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVEYRCFV GGLAWATDDQ SLQNAFSKYG DVIDSKIITD RETGRSRGFG FVTFASDEAM RQAIEAMNGQ DLDGRNITVN EAQSRRSGGG GGGFSGGGGG
101: GYGGQRREGG GGGYGGGGGG YGGGRSGGGG GYGSREGGGG YGGGGGGYGG SRGGSGGGNW RE
101: GYGGQRREGG GGGYGGGGGG YGGGRSGGGG GYGSREGGGG YGGGGGGYGG SRGGSGGGNW RE
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGS
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
101: YGGGGGRREG GGGYSGGGGG YSSRGGGGGS YGGGRREGGG GYGGGEGGGY GGSGGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.