Factsheet for TraesCS4D01G012900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G298700.1	Wheat	cytosol	92.25	99.48
TraesCS4B01G014700.2	Wheat	vacuole	99.15	99.15
HORVU4Hr1G002270.3	Barley	cytosol	91.53	98.69
KXG37902	Sorghum	cytosol	87.41	94.38
Zm00001d033480_P002	Maize	extracellular	87.17	94.12
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	85.84	92.08
Zm00001d013644_P001	Maize	extracellular	87.05	90.21
GSMUA_Achr4P22700_001	Banana	cytosol	72.88	89.85
GSMUA_Achr5P02740_001	Banana	cytosol	72.28	89.1
GSMUA_Achr7P01530_001	Banana	cytosol	81.96	88.38
Solyc10g081510.1.1	Tomato	extracellular	81.48	87.97
CDY38470	Canola	cytosol	81.11	87.58
CDX85436	Canola	cytosol	80.99	87.45
PGSC0003DMT400072279	Potato	cytosol, extracellular	80.99	87.45
AT5G17920.1	Thale cress	cytosol	80.75	87.19
Bra002116.1-P	Field mustard	cytosol	80.75	87.19
CDY02674	Canola	cytosol	80.75	87.19
Bra023645.1-P	Field mustard	cytosol	80.75	87.19
CDY25477	Canola	cytosol	80.75	87.19
CDX78767	Canola	cytosol	80.63	87.06
Bra006429.1-P	Field mustard	cytosol	80.51	86.93
CDX70785	Canola	cytosol	80.39	86.8
CDX74207	Canola	cytosol	80.15	86.54
PGSC0003DMT400022467	Potato	cytosol	80.02	86.41
KRG94871	Soybean	cytosol	79.78	86.37
AT3G03780.2	Thale cress	cytosol	79.9	86.27
CDX92051	Canola	cytosol	79.9	86.27
KRH06666	Soybean	nucleus	79.54	86.11
KRH57885	Soybean	cytosol	78.69	84.97
KRH04756	Soybean	cytosol, endoplasmic reticulum, nucleus	78.57	84.84
CDY50662	Canola	cytosol	77.0	84.46
GSMUA_Achr4P21470_001	Banana	mitochondrion	82.32	83.64
Bra001090.1-P	Field mustard	cytosol	79.78	83.52
KRH04805	Soybean	plastid	42.13	83.05
KRG89918	Soybean	endoplasmic reticulum	80.02	82.73
KRH17939	Soybean	nucleus	80.27	82.57
Solyc01g009180.2.1	Tomato	plastid	80.75	81.64
KRH63013	Soybean	cytosol	11.26	81.58
KRH04804	Soybean	endoplasmic reticulum	32.45	74.65
Bra006589.1-P	Field mustard	mitochondrion, plastid	73.24	74.23
CDX70955	Canola	mitochondrion	73.24	74.23
CDX88830	Canola	mitochondrion	73.12	74.11
AT5G20980.2	Thale cress	mitochondrion	72.4	73.65
KRH04683	Soybean	mitochondrion	23.73	70.25
CDX92419	Canola	plastid	72.88	68.72
CDY16584	Canola	plastid	72.4	63.28
KRH04746	Soybean	plastid	12.47	59.2
VIT_10s0042g00970.t01	Wine grape	cytosol	13.32	40.15

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0003871	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016740
InterPro:IPR038071	HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PANTHER:PTHR30519
PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	SignalP:SignalP-noTM	TIGRFAMs:TIGR01371	EnsemblPlantsGene:TraesCS4D01G012900	EnsemblPlants:TraesCS4D01G012900.1
InterPro:UROD/MetE-like_sf	TIGR:cd03311	TIGR:cd03312	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:6033173..6037981

Molecular Weight (calculated)

91280.5 Da

IEP (calculated)

7.457

GRAVY (calculated)

-0.132

Length

826 amino acids

Sequence
(BLAST)

001: MMPSCLRGTL LSFRPILAVL YPHHGSWLDP KWRPLVRIAC LHGTAKHSQY KDTSWLSQRK MASHIVGYPR MGPKRELKFA LESFWDGKSS AEDLEKVAAD
101: LRASIWKQMS EAGIKYIPSN TFSYYDQVLD TTAMLGAVPD RYSWTGGEIG HSTYFSMARG NATVPAMEMT KWFDTNYHFI VPELSPATKF SYASHKAVSE
201: YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VEKSFSLLSL LDSILPIYKE VVTELKAAGA SWIQFDEPTL VKDLAAHELA AFSSAYAALE SALSGLNVLI
301: ETYFADVPAE SYKTLTSLSG VTAYGFDLVR GTKTLELIKS AGIPSGKYLF AGVVDGRNIW ADDLAASLST LQSLEAVVGK DKLVVSTSCS LMHTAVDLVN
401: ETKLDSEIKS WLAFAAQKVV EVNALGKALA GLKDGAYFAA NAAAQASRRS SPRVNNEEVQ KAAAALKGSD HRRATPVSAR LDAQQKKLNL PILPTTTIGS
501: FPQTMDLRRV RREYKAKKIS EEEYVSAIKE EISKVVKIQE ELDIDVLVHG EPERNDMVEY FGEQLSGFAF TANGWVQSYG SRCVKPPIIY GDVSRPNPMT
601: VFWSKMAQDM TPRPMKGMLT GPVTILNWSF VRNDQPRFET CYQIALAIKK EVEDLEAGGI QVIQIDEAAL REGLPLRKSE HAFYLDWAVH SFRITNCGVQ
701: DTTQIHTHMC YSNFNDIIHS IINMDADVIT IENSRSDEKL LSVFREGVTY GAGIGPGVYD IHSPRIPSTE EIADRVNKML AVLDTNILWV NPDCGLKTRK
801: YTEVKPALTN MVAAAKLIRT QLASTK

Best Arabidopsis Sequence Match ( AT3G03780.1 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKSS ADDLQKVSAD LRSDIWKQMS AAGIKYIPSN TFSHYDQVLD TTAMLGAVPS RYGFTSGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVKF SYASHKAVNE YKEAKALGVE TVPVLVGPVS YLLLSKLAKG VDKSFDLLSL LPKILPVYKE VIAELKAAGA
201: SWIQLDEPLF VMDLEGHKLQ AFSGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTIDLIKS GFPQGKYLFA GVVDGRNIWA
301: NDLAASLITL QSLEGVVGKD KLVVSTSCSL LHTAVDLINE TKLDAEIKSW LAFAAQKVVE VDALAKALAG QTNESFFTAN ADALSSRRSS PRVTNESVQK
401: AAAALKGSDH RRTTEVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKISE EDYVKAIKEE IKKVVDIQED LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKPMTV FWSSTAQSMT KRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKAEH SFYLDWAVHS FRITNCGVQD STQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSTDE IADRINKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKAM VDAAKLIRSQ LGSAK

Arabidopsis Description

MS25-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.