CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04683	Soybean	mitochondrion	39.28	50.54
KRH04756	Soybean	cytosol, endoplasmic reticulum, nucleus	91.36	42.88
KRH57885	Soybean	cytosol	85.79	40.26
KRH06666	Soybean	nucleus	79.94	37.61
KRG94871	Soybean	cytosol	78.83	37.09
AT3G03780.2	Thale cress	cytosol	77.16	36.21
Solyc10g081510.1.1	Tomato	extracellular	77.16	36.21
CDX74207	Canola	cytosol	77.16	36.21
CDX92051	Canola	cytosol	77.16	36.21
AT5G17920.1	Thale cress	cytosol	76.88	36.08
PGSC0003DMT400072279	Potato	cytosol, extracellular	76.88	36.08
Os12t0623900-01	Rice	extracellular	76.6	35.9
Os12t0624000-02	Rice	extracellular	76.6	35.9
CDY38470	Canola	cytosol	76.32	35.82
CDY25477	Canola	cytosol	76.04	35.69
Bra002116.1-P	Field mustard	cytosol	75.77	35.56
CDX85436	Canola	cytosol	75.49	35.42
Bra023645.1-P	Field mustard	cytosol	75.49	35.42
KXG24060	Sorghum	cytosol	75.49	35.38
CDY02674	Canola	cytosol	75.21	35.29
CDX78767	Canola	cytosol	75.21	35.29
CDX70785	Canola	cytosol	75.21	35.29
Bra006429.1-P	Field mustard	cytosol	75.21	35.29
TraesCS4A01G298700.1	Wheat	cytosol	75.21	35.25
HORVU4Hr1G002270.3	Barley	cytosol	75.21	35.25
Zm00001d031128_P004	Maize	plasma membrane, plastid	74.93	35.12
Bra001090.1-P	Field mustard	cytosol	77.16	35.11
Zm00001d033480_P002	Maize	extracellular	74.37	34.9
KXG37902	Sorghum	cytosol	74.37	34.9
CDY50662	Canola	cytosol	72.14	34.4
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	73.54	34.29
GSMUA_Achr7P01530_001	Banana	cytosol	72.98	34.2
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	73.26	34.07
KRG89918	Soybean	endoplasmic reticulum	75.77	34.04
KRH17939	Soybean	nucleus	75.21	33.62
Zm00001d013644_P001	Maize	extracellular	74.09	33.38
TraesCS5A01G024900.2	Wheat	cytosol	73.54	32.71
GSMUA_Achr4P21470_001	Banana	mitochondrion	73.82	32.6
TraesCS4B01G014700.2	Wheat	vacuole	74.65	32.45
TraesCS4D01G012900.1	Wheat	mitochondrion	74.65	32.45
GSMUA_Achr4P22700_001	Banana	cytosol	51.25	27.46
GSMUA_Achr5P02740_001	Banana	cytosol	50.97	27.31
KRH04746	Soybean	plastid	5.57	11.49
KRH04805	Soybean	plastid	6.69	5.73
KRH63013	Soybean	cytosol	1.39	4.39
HORVU5Hr1G006780.7	Barley	cytosol	4.18	3.21

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	UniProt:A0A0R0FR64	EMBL:ACUP02010547
InterPro:Cbl-indep_Met_Synth_N	EnsemblPlantsGene:GLYMA_17G188000	GO:GO:0003674	GO:GO:0003824	GO:GO:0003871	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008652	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0032259	InterPro:IPR038071	EnsemblPlants:KRH04804	ProteinID:KRH04804	ProteinID:KRH04804.1
PFAM:PF08267	PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	MetaCyc:PWY-5041	MetaCyc:PWY-6151	MetaCyc:PWY-6936
MetaCyc:PWY-702	SUPFAM:SSF51726	UniParc:UPI0006EDD25B	InterPro:UROD/MetE-like_sf	:	:

Description

hypothetical protein

Coordinates

chr17:+:24337467..24340754

Molecular Weight (calculated)

39328.1 Da

IEP (calculated)

4.684

GRAVY (calculated)

0.063

Length

359 amino acids

Sequence
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKSS ADDLKKVAFD LRASIWKQMI DAGIKYIPNN TFSYYDQVLD TTAMLGAVPP RYGWNSEEIG FDTFFSMARG
101: NASVPTMEMT KWFDTNYHFI VPELGPDVNF SYASHKAVNE YKEAKALGVD TVPVLIGPVS YLVLSKPAKG VDKSFCLLSL LPKVLAIYRE VVADLKQAGA
201: SWIQFDEPIL VLDLGSQTLQ ALTAAYAELE STLSGLNVLI ETYFADIPVE AYQTLTALNG VAAFGFDLVR GTKTLDLIKG GFPSGKYLFA GVVDGRNIWA
301: NNLTASLDTL NSLEGIVGKA AAKATNSDSI VEFVMQVCFL DAQEIAPPPR RNTQPLVDE

Best Arabidopsis Sequence Match ( AT3G03780.1 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKSS ADDLQKVSAD LRSDIWKQMS AAGIKYIPSN TFSHYDQVLD TTAMLGAVPS RYGFTSGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVKF SYASHKAVNE YKEAKALGVE TVPVLVGPVS YLLLSKLAKG VDKSFDLLSL LPKILPVYKE VIAELKAAGA
201: SWIQLDEPLF VMDLEGHKLQ AFSGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTIDLIKS GFPQGKYLFA GVVDGRNIWA
301: NDLAASLITL QSLEGVVGKD KLVVSTSCSL LHTAVDLINE TKLDAEIKSW LAFAAQKVVE VDALAKALAG QTNESFFTAN ADALSSRRSS PRVTNESVQK
401: AAAALKGSDH RRTTEVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKISE EDYVKAIKEE IKKVVDIQED LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKPMTV FWSSTAQSMT KRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKAEH SFYLDWAVHS FRITNCGVQD STQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSTDE IADRINKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKAM VDAAKLIRSQ LGSAK

Arabidopsis Description

MS25-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.