Factsheet for Bra002116.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25477	Canola	cytosol	99.74	99.74
CDY38470	Canola	cytosol	99.35	99.35
Bra006429.1-P	Field mustard	cytosol	98.69	98.69
AT5G17920.1	Thale cress	cytosol	97.52	97.52
Bra023645.1-P	Field mustard	cytosol	97.12	97.12
Bra001090.1-P	Field mustard	cytosol	91.63	88.85
Solyc10g081510.1.1	Tomato	extracellular	88.63	88.63
PGSC0003DMT400072279	Potato	cytosol, extracellular	88.37	88.37
KRH06666	Soybean	nucleus	87.97	88.2
KRG94871	Soybean	cytosol	87.71	87.94
Os12t0624000-02	Rice	extracellular	87.97	87.86
GSMUA_Achr4P22700_001	Banana	cytosol	76.86	87.76
Zm00001d031128_P004	Maize	plasma membrane, plastid	87.71	87.6
Os12t0623900-01	Rice	extracellular	87.71	87.6
HORVU4Hr1G002270.3	Barley	cytosol	87.45	87.34
TraesCS4A01G298700.1	Wheat	cytosol	87.32	87.21
KXG24060	Sorghum	cytosol	87.32	87.21
KXG37902	Sorghum	cytosol	87.19	87.19
Zm00001d033480_P002	Maize	extracellular	87.19	87.19
GSMUA_Achr5P02740_001	Banana	cytosol	76.21	87.01
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	87.06	86.49
GSMUA_Achr7P01530_001	Banana	cytosol	86.41	86.29
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	87.06	86.27
KRH57885	Soybean	cytosol	86.14	86.14
KRH04756	Soybean	cytosol, endoplasmic reticulum, nucleus	86.01	86.01
HORVU5Hr1G006780.7	Barley	cytosol	51.5	84.37
Zm00001d013644_P001	Maize	extracellular	87.06	83.56
KRH04805	Soybean	plastid	45.62	83.29
TraesCS5A01G024900.2	Wheat	cytosol	87.06	82.53
GSMUA_Achr4P21470_001	Banana	mitochondrion	86.27	81.18
TraesCS4B01G014700.2	Wheat	vacuole	87.45	80.99
TraesCS4D01G012900.1	Wheat	mitochondrion	87.19	80.75
KRH63013	Soybean	cytosol	11.76	78.95
KRH04804	Soybean	endoplasmic reticulum	35.56	75.77
Bra006589.1-P	Field mustard	mitochondrion, plastid	79.35	74.48
KRH04746	Soybean	plastid	12.94	56.9

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	EnsemblPlantsGene:Bra002116	EnsemblPlants:Bra002116.1
EnsemblPlants:Bra002116.1-P	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008652	GO:GO:0009058
GO:GO:0009086	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR038071	UniProt:M4CD35
HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PIRSF:PIRSF000382	PANTHER:PTHR30519
PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	TIGRFAMs:TIGR01371	UniParc:UPI0002543B38	InterPro:UROD/MetE-like_sf	SEG:seg

Description

AT5G17920 (E=0.0) ATCIMS, ATMETS, ATMS1 | ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ copper ion binding / methionine synthase

Coordinates

chrA10:-:11360684..11364165

Molecular Weight (calculated)

84502.4 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.162

Length

765 amino acids

Sequence
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD IRSGIWKQMS EAGTKYIPSN TFAHYDQVLD TTAMLGAVPP RYGYTSGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPDVKF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VEKSFDLLSL LPKILPVYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGHKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL EALEGVVGKD KLVVSPSCSL LHTAVDLVNE TKLDDEIKSW LAFAAQKIVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAMKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIN
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD TTQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Arabidopsis Description

MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.