Factsheet for Bra006589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88830	Canola	mitochondrion	99.02	99.02
AT5G20980.2	Thale cress	mitochondrion	88.22	88.55
GSMUA_Achr4P22700_001	Banana	cytosol	65.89	80.15
PGSC0003DMT400022467	Potato	cytosol	74.97	79.87
GSMUA_Achr5P02740_001	Banana	cytosol	65.52	79.7
Bra002116.1-P	Field mustard	cytosol	74.48	79.35
Os12t0624000-02	Rice	extracellular	74.23	78.98
Bra006429.1-P	Field mustard	cytosol	73.99	78.82
Bra023645.1-P	Field mustard	cytosol	73.86	78.69
Os12t0623900-01	Rice	extracellular	73.86	78.59
GSMUA_Achr7P01530_001	Banana	cytosol	73.86	78.59
HORVU4Hr1G002270.3	Barley	cytosol	73.74	78.46
TraesCS4A01G298700.1	Wheat	cytosol	73.74	78.46
VIT_06s0009g01080.t01	Wine grape	plastid	77.18	78.23
KRG89918	Soybean	endoplasmic reticulum	76.56	78.1
KXG24060	Sorghum	cytosol	73.37	78.07
Zm00001d031128_P004	Maize	plasma membrane, plastid	73.37	78.07
Zm00001d033480_P002	Maize	extracellular	73.13	77.91
KXG37902	Sorghum	cytosol	73.01	77.78
KRH17939	Soybean	nucleus	76.56	77.71
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	72.76	77.01
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	72.76	76.81
Bra001090.1-P	Field mustard	cytosol	74.36	76.81
Solyc01g009180.2.1	Tomato	plastid	75.58	75.4
Zm00001d013644_P001	Maize	extracellular	73.5	75.16
GSMUA_Achr4P21470_001	Banana	mitochondrion	74.85	75.03
HORVU5Hr1G006780.7	Barley	cytosol	42.82	74.73
TraesCS5A01G024900.2	Wheat	cytosol	73.13	73.85
TraesCS4B01G014700.2	Wheat	vacuole	74.36	73.37
TraesCS4D01G012900.1	Wheat	mitochondrion	74.23	73.24
KRH04683	Soybean	mitochondrion	24.54	71.68

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	EnsemblPlantsGene:Bra006589	EnsemblPlants:Bra006589.1
EnsemblPlants:Bra006589.1-P	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008652	GO:GO:0008705	GO:GO:0009058
GO:GO:0009086	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259
InterPro:IPR038071	UniProt:M4CQU8	HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267
PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	TIGRFAMs:TIGR01371	UniParc:UPI00025400BB	InterPro:UROD/MetE-like_sf
SEG:seg	:	:	:	:	:

Description

AT5G20980 (E=0.0) ATMS3 | ATMS3 (methionine synthase 3); 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase

Coordinates

chrA03:-:4174595..4178792

Molecular Weight (calculated)

90889.3 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.144

Length

815 amino acids

Sequence
(BLAST)

001: MGQLALQRVS PLPSLPRRLP SLPPPSSYSP SLLFATASRR PRRHGFYLVR AMSSHIVGYP RIGPKRELKF ALESFWDGKT AANDLQTVAA NLRNSIWKHM
101: ADAGIKYIPS NTFSYYDQML DTTAMLGAVP SRYGWKSGEI GFDVYFSMAR GNDSVPAMEM TKWFDTNYHY IVPELGPDVE FSYASHKAVD EFKEAKALGI
201: DTVPVLIGPI TYLLLSKPAK GVDKSFCLLS LIDKILPIYK EVFDDLKSAG ARWIQFDEPI LVMDLDTNQL QAFSDAYSHM ESSLAGLNVL IATYFADVPA
301: EAYKTLTSLK CVTGFGFDFV RGLETLDLIK GGFPRGKLLF AGVVDGRNIW ANDLSASLKT LQSLEEIVGK DKVVVSTSCS LLHTAVDLVN EVKLDKELKS
401: WLAFAAQKVV EVNALAKSFS GVKDEALFSS NSMGQASRRS SPRVTNAAVQ QDVAAVKKSD HRRSTEVSAR LRSQQKKLNL PALPTTTIGS FPQTADLRRI
501: RREFKAKKIS DIDYVQAIKV EFEKVIKLQE ELGIDVLVHG EAERNDMVEF FGEQLSGFAF TSNGWVQSYG SRCVKPPIIY GDVTRPKAMT VFWSSMAQKM
601: TQHPMKGMLT GPVTILNWSF VRNDQPRHET CFQIALAIKD EVEDLEKAGI TVIQIDEAAL REGLPLRRSE QEFYLDWAVH AFRITNCDVQ DTTQIHTHMC
701: YSNFNDIIHS IINMDADVIT IENSRSDEKL LSVFQEGVKY CAGIGPGVYD IHSPRIPSAE EIAERINKML AVLDSKVLWV NPDCGLKTRK YSEVKSALSN
801: MVAAAKLVRS ELIKS

Best Arabidopsis Sequence Match ( AT5G20980.1 )
(BLAST)

001: MGQLALQRLQ PLASLPRRPP SLPPPSSATP SLPCATASRR PRFYVARAMS SHIVGYPRIG PKRELKFALE SFWDGKTNVD DLQNVAANLR KSIWKHMAHA
101: GIKYIPSNTF SYYDQMLDTT AMLGAVPSRY GWESGEIGFD VYFSMARGNA SAHAMEMTKW FDTNYHYIVP ELGPDVNFSY ASHKAVVEFK EAKALGIDTV
201: PVLIGPMTYL LLSKPAKGVE KSFCLLSLID KILPVYKEVL ADLKSAGARW IQFDEPILVM DLDTSQLQAF SDAYSHMESS LAGLNVLIAT YFADVPAEAY
301: KTLMSLKCVT GFGFDLVRGL ETLDLIKMNF PRGKLLFAGV VDGRNIWAND LSASLKTLQT LEDIVGKEKV VVSTSCSLLH TAVDLVNEMK LDKELKSWLA
401: FAAQKVVEVN ALAKSFSGAK DEALFSSNSM RQASRRSSPR VTNAAVQQDV DAVKKSDHHR STEVSVRLQA QQKKLNLPAL PTTTIGSFPQ TTDLRRIRRE
501: FKAKKISEVD YVQTIKEEYE KVIKLQEELG IDVLVHGEAE RNDMVEFFGE QLSGFAFTSN GWVQSYGSRC VKPPIIYGDI TRPKAMTVFW SSMAQKMTQR
601: PMKGMLTGPV TILNWSFVRN DQPRHETCFQ IALAIKDEVE DLEKAGVTVI QIDEAALREG LPLRKSEQKF YLDWAVHAFR ITNSGVQDST QIHTHMCYSN
701: FNDIIHSIID MDADVITIEN SRSDEKLLSV FHEGVKYGAG IGPGVYDIHS PRIPSTEEIA ERINKMLAVL DSKVLWVNPD CGLKTRNYSE VKSALSNMVA
801: AAKLIRSQLN KS

Arabidopsis Description

MS35-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WNZ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.