Factsheet for PGSC0003DMT400022467

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009180.2.1	Tomato	plastid	98.56	92.29
VIT_08s0056g01570.t01	Wine grape	cytosol, extracellular	88.24	88.24
GSMUA_Achr4P22700_001	Banana	cytosol	76.47	87.31
GSMUA_Achr5P02740_001	Banana	cytosol	76.21	87.01
HORVU4Hr1G002270.3	Barley	cytosol	87.06	86.95
KXG37902	Sorghum	cytosol	86.93	86.93
Zm00001d031128_P004	Maize	plasma membrane, plastid	86.93	86.81
Os12t0624000-02	Rice	extracellular	86.93	86.81
Os12t0623900-01	Rice	extracellular	86.93	86.81
KXG24060	Sorghum	cytosol	86.93	86.81
TraesCS4A01G298700.1	Wheat	cytosol	86.8	86.68
Zm00001d033480_P002	Maize	extracellular	86.67	86.67
PGSC0003DMT400072279	Potato	cytosol, extracellular	86.54	86.54
GSMUA_Achr7P01530_001	Banana	cytosol	86.27	86.16
KRG89918	Soybean	endoplasmic reticulum	88.76	84.98
KRH17939	Soybean	nucleus	89.15	84.93
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	85.36	84.81
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	85.36	84.59
VIT_06s0009g01080.t01	Wine grape	plastid	87.19	82.96
Zm00001d013644_P001	Maize	extracellular	86.41	82.94
GSMUA_Achr4P21470_001	Banana	mitochondrion	86.67	81.55
HORVU5Hr1G006780.7	Barley	cytosol	49.67	81.37
TraesCS5A01G024900.2	Wheat	cytosol	85.36	80.92
TraesCS4B01G014700.2	Wheat	vacuole	86.67	80.27
TraesCS4D01G012900.1	Wheat	mitochondrion	86.41	80.02
KRH04683	Soybean	mitochondrion	27.71	75.99
AT5G20980.2	Thale cress	mitochondrion	80.13	75.49
CDX70955	Canola	mitochondrion	80.13	75.21
CDX88830	Canola	mitochondrion	80.0	75.09
Bra006589.1-P	Field mustard	mitochondrion, plastid	79.87	74.97
CDX92419	Canola	plastid	78.95	68.95
CDY16584	Canola	plastid	78.43	63.49

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0003871	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0008652	GO:GO:0008705	GO:GO:0009058	GO:GO:0009086	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:IPR038071	UniProt:M1AGR8	HAMAP:MF_00172
InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	EnsemblPlantsGene:PGSC0003DMG400008708	PGSC:PGSC0003DMG400008708	EnsemblPlants:PGSC0003DMT400022467
PIRSF:PIRSF000382	PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	TIGRFAMs:TIGR01371	UniParc:UPI000294E678
InterPro:UROD/MetE-like_sf	:	:	:	:	:

Description

Methionine synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400008708]

Coordinates

chr1:+:6185332..6190526

Molecular Weight (calculated)

84792.4 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.168

Length

765 amino acids

Sequence
(BLAST)

001: MASHVVGYPR MGPKRELKFA LESFWDGKSN SEDLEKVAAD LRSSIWKQMA DAGIKYIPSN TFSYYDQVLD TTAMLGAVPP RYGWNGGEIG FDVYFPMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPDVKF SYASHKAVSE YKEAKSLGID TVPVLVGPVS FLLLSKAAKG VEKSFPLLSL IEKILPVYKE VIAELKAAGA
201: NWIQFDEPTL VKDLDSHQLQ AFSHAYSELE SSLSGLNVLI ETYFADVPAE AFKTVTSLKC VTALGFDLVR GSKNLDLIKS GFPSEKYLFA GVVDGRNIWA
301: NDLASSLSTL QALENLVGKD KLVVSTSCSL LHTAVDLVNE TKLDEEIKSW LAFAAQKLVE VNALAKALAG QKDEAVFSAN AAARTSRKSS PRVTNGAVQK
401: AAAALKGSDH RRATTVSARL EAQQKKLSLP ALPTTTIGSF PQTLELRKVR REYKANKISE EDYVKYITEE ISRVVKLQED LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPIIYG DVSRPKPMTV FWSSRAQSMS KRPMKGMLTG PVTILNWSFV RDDQLRFETC YQIALAIKDE VEDLEKAGIN
601: VIQIDEAALR EGLPLRKSEE AFYLNWAVHS FRITNCGVQD TTQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSTEE IADRISKMLA VLDTNILWVN PDCGLKTRKY TEVKPALSNM VAAAKLLRDQ LASTK

Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Arabidopsis Description

MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.