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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plasma membrane: 17827676
plasma membrane: 18260611
extracellular: 18372294
extracellular: 21255809
plastid: 21433289
extracellular: 23159799
nucleus: 24133045
extracellular: 25047395
golgi: 25047511
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 17827676 doi
S Nohzadeh Malakshah, M Habibi Rezaei, M Heidari, GH Salekdeh
Agricultural Biotechnology Research Institute of Iran, Karaj, Iran.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 21255809 doi
T Shinano, S Komatsu, T Yoshimura, S Tokutake, FJ Kong, T Watanabe, J Wasaki, M Osaki
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os12t0623900-01 Rice extracellular 98.43 98.43
Zm00001d031128_P004 Maize plasma membrane, plastid 94.52 94.52
KXG24060 Sorghum cytosol 94.26 94.26
GSMUA_Achr4P22700_001 Banana cytosol 79.63 91.04
GSMUA_Achr5P02740_001 Banana cytosol 78.85 90.15
GSMUA_Achr7P01530_001 Banana cytosol 89.69 89.69
CDY38470 Canola cytosol 88.25 88.37
Solyc10g081510.1.1 Tomato extracellular 87.99 88.1
Bra002116.1-P Field mustard cytosol 87.86 87.97
CDY25477 Canola cytosol 87.86 87.97
CDY02674 Canola cytosol 87.86 87.97
CDX85436 Canola cytosol 87.86 87.97
AT5G17920.1 Thale cress cytosol 87.73 87.84
CDX78767 Canola cytosol 87.73 87.84
Bra023645.1-P Field mustard cytosol 87.73 87.84
PGSC0003DMT400072279 Potato cytosol, extracellular 87.6 87.71
Bra006429.1-P Field mustard cytosol 87.6 87.71
CDX70785 Canola cytosol 87.6 87.71
KRH06666 Soybean nucleus 87.21 87.55
KRG94871 Soybean cytosol 87.08 87.42
AT3G03780.2 Thale cress cytosol 86.81 86.93
PGSC0003DMT400022467 Potato cytosol 86.81 86.93
CDX74207 Canola cytosol 86.81 86.93
CDX92051 Canola cytosol 86.55 86.67
KRH57885 Soybean cytosol 86.03 86.14
KRH04756 Soybean cytosol, endoplasmic reticulum, nucleus 86.03 86.14
CDY50662 Canola cytosol 84.33 85.79
GSMUA_Achr4P21470_001 Banana mitochondrion 90.34 85.12
Bra001090.1-P Field mustard cytosol 86.29 83.78
KRH04805 Soybean plastid 45.43 83.05
KRH63013 Soybean cytosol 12.27 82.46
KRH17939 Soybean nucleus 86.29 82.32
KRG89918 Soybean endoplasmic reticulum 85.64 82.1
Solyc01g009180.2.1 Tomato plastid 87.08 81.64
KRH04804 Soybean endoplasmic reticulum 35.9 76.6
CDX70955 Canola mitochondrion 79.11 74.36
AT5G20980.2 Thale cress mitochondrion 78.72 74.26
Bra006589.1-P Field mustard mitochondrion, plastid 78.98 74.23
CDX88830 Canola mitochondrion 78.98 74.23
KRH04683 Soybean mitochondrion 25.85 70.97
CDX92419 Canola plastid 78.85 68.95
CDY16584 Canola plastid 78.33 63.49
KRH04746 Soybean plastid 13.45 59.2
Protein Annotations
KEGG:00270+2.1.1.14KEGG:00450+2.1.1.14Gene3D:3.20.20.210MapMan:4.1.2.2.6.2.1EntrezGene:4352832EntrezGene:4352833
ProteinID:ABA99428.1ProteinID:ABA99429.1EMBL:AK067726ProteinID:BAF30333.1ProteinID:BAT18164.1InterPro:Cbl-indep_Met_Synth_N
InterPro:Cobalamin-indep_Met_synthaseProteinID:EEE53643.1GO:GO:0003674GO:GO:0003824GO:GO:0003871GO:GO:0005488
GO:GO:0005575GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0008270GO:GO:0008652GO:GO:0008705
GO:GO:0009058GO:GO:0009086GO:GO:0009987GO:GO:0016740GO:GO:0032259GO:GO:0046872
GO:GO:0050667InterPro:IPR038071EMBL:JN944357HAMAP:MF_00172InterPro:Met_Synth_C/arcEnsemblPlantsGene:Os12g0624000
EnsemblPlants:Os12t0624000-02PFAM:PF01717PFAM:PF08267PIRSF:PIRSF000382PANTHER:PTHR30519PANTHER:PTHR30519:SF11
UniProt:Q2QLY4SUPFAM:SSF51726TIGRFAMs:TIGR01371UniParc:UPI0000680BD5InterPro:UROD/MetE-like_sfRefSeq:XP_015619851.1
SEG:seg:::::
Description
Similar to Methionine synthase protein. (Os12t0624000-01);Similar to Methionine synthase protein. (Os12t0624000-02)
Coordinates
chr12:+:26658185..26662924
Molecular Weight (calculated)
84670.3 Da
IEP (calculated)
6.228
GRAVY (calculated)
-0.128
Length
766 amino acids
Sequence
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKSS AEDLEKVATD LRASIWKQMA DAGIKYIPSN TFSYYDQVLD TTAMLGAVPE RYSWTGGEIG FSTYFSMARG
101: NATVPAMEMT KWFDTNYHFI VPELGPNTKF SYSSHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKPAKG VEKSFALLSL LSSILPVYKE VIAELKAAGA
201: TWIQFDEPTL VLDLDSHQLA AFSAAYTELE SALSGLNVLI ETYFADIPAE SYKTLTSLNS VTAYGFDLIR GSKTLDLVKS AGFPSGKYLF AGVVDGRNIW
301: ADDLAASLTT LESLEAIVGK DKLVVSTSCS LMHTAVDLVN ETKLDSEIKS WLAFAAQKVV EVNALAKALA GQKDEAYFAA NTAAQASRRS SPRVTNEEVQ
401: KAAAALRGSD HRRATNVSAR LDAQQKKLNL PVLPTTTIGS FPQTVELRRV RREYKAKKIS EDEYVSAIKE EISKVVKIQE ELDIDVLVHG EPERNDMVEY
501: FGEQLSGFAF TANGWVQSYG SRCVKPPIIY GDVSRPNAMT VFWSKMAQSM TSRPMKGMLT GPVTILNWSF VRNDQPRFET CYQIALAIKK EVEDLEAGGI
601: QVIQIDEAAL REGLPLRKAE HAFYLDWAVH SFRITNCGVQ DTTQIHTHMC YSNFNDIIHS IINMDADVIT IENSRSDEKL LSVFREGVKY GAGIGPGVYD
701: IHSPRIPSTE EIADRINKML AVLDTNILWV NPDCGLKTRK YTEVKPALTN MVLAAKLIRT QLASAK
Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK
Arabidopsis Description
MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.