CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57885	Soybean	cytosol	95.82	95.82
KRH04805	Soybean	plastid	51.63	94.27
KRH06666	Soybean	nucleus	91.24	91.48
KRH04804	Soybean	endoplasmic reticulum	42.88	91.36
KRG94871	Soybean	cytosol	90.85	91.09
Solyc10g081510.1.1	Tomato	extracellular	87.58	87.58
PGSC0003DMT400072279	Potato	cytosol, extracellular	87.19	87.19
AT5G17920.1	Thale cress	cytosol	86.67	86.67
CDY38470	Canola	cytosol	86.41	86.41
AT3G03780.2	Thale cress	cytosol	86.41	86.41
Os12t0623900-01	Rice	extracellular	86.41	86.29
CDY25477	Canola	cytosol	86.27	86.27
CDX74207	Canola	cytosol	86.14	86.14
GSMUA_Achr4P22700_001	Banana	cytosol	75.42	86.12
Os12t0624000-02	Rice	extracellular	86.14	86.03
CDX92051	Canola	cytosol	86.01	86.01
CDY02674	Canola	cytosol	86.01	86.01
Bra002116.1-P	Field mustard	cytosol	86.01	86.01
Zm00001d033480_P002	Maize	extracellular	85.88	85.88
Bra023645.1-P	Field mustard	cytosol	85.88	85.88
CDX85436	Canola	cytosol	85.88	85.88
KXG24060	Sorghum	cytosol	85.88	85.77
CDX78767	Canola	cytosol	85.75	85.75
KXG37902	Sorghum	cytosol	85.75	85.75
Bra006429.1-P	Field mustard	cytosol	85.62	85.62
GSMUA_Achr5P02740_001	Banana	cytosol	74.9	85.52
Zm00001d031128_P004	Maize	plasma membrane, plastid	85.62	85.51
CDX70785	Canola	cytosol	85.49	85.49
GSMUA_Achr7P01530_001	Banana	cytosol	85.36	85.25
CDY50662	Canola	cytosol	83.79	85.13
HORVU4Hr1G002270.3	Barley	cytosol	85.23	85.12
TraesCS4A01G298700.1	Wheat	cytosol	85.23	85.12
Bra001090.1-P	Field mustard	cytosol	86.14	83.52
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	83.79	83.25
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	83.79	83.03
KRG89918	Soybean	endoplasmic reticulum	86.14	82.48
KRH17939	Soybean	nucleus	86.14	82.07
Zm00001d013644_P001	Maize	extracellular	84.84	81.43
GSMUA_Achr4P21470_001	Banana	mitochondrion	86.27	81.18
HORVU5Hr1G006780.7	Barley	cytosol	49.02	80.3
TraesCS5A01G024900.2	Wheat	cytosol	83.79	79.43
KRH63013	Soybean	cytosol	11.76	78.95
TraesCS4B01G014700.2	Wheat	vacuole	85.1	78.81
TraesCS4D01G012900.1	Wheat	mitochondrion	84.84	78.57
KRH04683	Soybean	mitochondrion	25.75	70.61
KRH04746	Soybean	plastid	13.2	58.05

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	EntrezGene:100807833	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	EMBL:ACUP02010540
InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase	EnsemblPlantsGene:GLYMA_17G184900	GO:GO:0003674	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008652	GO:GO:0008705
GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0050667
UniProt:I1MW49	InterPro:IPR038071	EnsemblPlants:KRH04756	ProteinID:KRH04756	ProteinID:KRH04756.1	HAMAP:MF_00172
InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PIRSF:PIRSF000382	PANTHER:PTHR30519	PANTHER:PTHR30519:SF11
MetaCyc:PWY-5041	MetaCyc:PWY-6151	MetaCyc:PWY-6936	MetaCyc:PWY-702	SUPFAM:SSF51726	TIGRFAMs:TIGR01371
UniParc:UPI000233E3E4	InterPro:UROD/MetE-like_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:23521954..23528610

Molecular Weight (calculated)

84591.2 Da

IEP (calculated)

6.184

GRAVY (calculated)

-0.157

Length

765 amino acids

Sequence
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKSS ADDLKKVASD LRASIWKQMI DAGIKYIPSN TFSYYDQVLD TTAMLGAVPP RYGWNGEEIG FDTFFSMARG
101: NASVPAMEMT KWFDTNYHFI VPELGPDVNF SYASHKAVNE YKEAKALGVD TVPVLIGPVS YLVLSKPAKG VDKSFCLLSL LPKVLAIYKE VVADLKQAGA
201: SWIQFDEPIL VLDLGSQTLQ ALTAAYAELE STLSGLNVLI ETYFADIPAE AYQTLTALNG VAAFGFDLVR GTKTLDLIKG GFPSGKYLFA GVVDGRNIWA
301: NNLTASLDTL NSLEGIVGKD KLVVSTSCSL LHTAVDLVNE TKLDNEIKSW LAFAAQKIVE VNALAKALSG QKDEAFFSSN ADAQASRKFS PRVTNEAVQK
401: AAAALKGSDH RRATNVSTRL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKANKISE EEYVSSIKEE IRKVVELQEN LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT VNGWVQSYGS RCVKPPIIYG DVSRPKPMTV FWSSTAQSMT KRPMKGMLTG PVTILNWSFV RNDQPRSETT YQIALAIKDE VEDLEKAGIT
601: VIQIDEAALR EGLPLRKSEQ ANYLDWAVHA FRITNVGVQD TTQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPPTDE IADRINKMLA VLEKNILWVN PDCGLKTRKY PEVNPALTNM VAATKLIRSK LSSGK

Best Arabidopsis Sequence Match ( AT3G03780.1 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKSS ADDLQKVSAD LRSDIWKQMS AAGIKYIPSN TFSHYDQVLD TTAMLGAVPS RYGFTSGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVKF SYASHKAVNE YKEAKALGVE TVPVLVGPVS YLLLSKLAKG VDKSFDLLSL LPKILPVYKE VIAELKAAGA
201: SWIQLDEPLF VMDLEGHKLQ AFSGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTIDLIKS GFPQGKYLFA GVVDGRNIWA
301: NDLAASLITL QSLEGVVGKD KLVVSTSCSL LHTAVDLINE TKLDAEIKSW LAFAAQKVVE VDALAKALAG QTNESFFTAN ADALSSRRSS PRVTNESVQK
401: AAAALKGSDH RRTTEVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKISE EDYVKAIKEE IKKVVDIQED LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKPMTV FWSSTAQSMT KRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKAEH SFYLDWAVHS FRITNCGVQD STQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSTDE IADRINKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKAM VDAAKLIRSQ LGSAK

Arabidopsis Description

MS25-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.