Factsheet for TraesCS5B01G022800.4

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular, unclear

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, plastid, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 19786127
plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	98.7	98.96
TraesCS5A01G024900.2	Wheat	cytosol	98.58	94.3
HORVU5Hr1G006780.7	Barley	cytosol	56.09	92.72
GSMUA_Achr4P22700_001	Banana	cytosol	77.2	88.96
GSMUA_Achr7P01530_001	Banana	cytosol	87.69	88.38
GSMUA_Achr5P02740_001	Banana	cytosol	76.3	87.91
CDY38470	Canola	cytosol	86.66	87.45
Solyc10g081510.1.1	Tomato	extracellular	86.53	87.32
CDX85436	Canola	cytosol	86.4	87.19
Bra002116.1-P	Field mustard	cytosol	86.27	87.06
Bra023645.1-P	Field mustard	cytosol	86.27	87.06
CDY25477	Canola	cytosol	86.27	87.06
CDY02674	Canola	cytosol	86.27	87.06
AT5G17920.1	Thale cress	cytosol	86.14	86.93
CDX78767	Canola	cytosol	86.14	86.93
PGSC0003DMT400072279	Potato	cytosol, extracellular	86.01	86.8
Bra006429.1-P	Field mustard	cytosol	86.01	86.8
CDX70785	Canola	cytosol	85.88	86.67
KRH06666	Soybean	nucleus	85.62	86.63
KRG94871	Soybean	cytosol	85.23	86.24
AT3G03780.2	Thale cress	cytosol	85.23	86.01
CDX74207	Canola	cytosol	85.1	85.88
TraesCS4B01G014700.2	Wheat	vacuole	91.84	85.84
CDX92051	Canola	cytosol	84.84	85.62
PGSC0003DMT400022467	Potato	cytosol	84.59	85.36
CDY50662	Canola	cytosol	82.12	84.2
KRH04756	Soybean	cytosol, endoplasmic reticulum, nucleus	83.03	83.79
KRH57885	Soybean	cytosol	82.9	83.66
GSMUA_Achr4P21470_001	Banana	mitochondrion	87.56	83.15
Bra001090.1-P	Field mustard	cytosol	84.72	82.89
KRH04805	Soybean	plastid	44.43	81.86
KRG89918	Soybean	endoplasmic reticulum	83.68	80.85
KRH17939	Soybean	nucleus	84.07	80.82
Solyc01g009180.2.1	Tomato	plastid	85.36	80.66
KRH63013	Soybean	cytosol	11.01	74.56
KRH04804	Soybean	endoplasmic reticulum	34.07	73.26
CDX70955	Canola	mitochondrion	77.33	73.25
CDX88830	Canola	mitochondrion	76.81	72.76
Bra006589.1-P	Field mustard	mitochondrion, plastid	76.81	72.76
AT5G20980.2	Thale cress	mitochondrion	76.17	72.41
KRH04683	Soybean	mitochondrion	24.87	68.82
CDX92419	Canola	plastid	76.17	67.12
CDY16584	Canola	plastid	75.65	61.8
KRH04746	Soybean	plastid	12.82	56.9

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0003871	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016740
InterPro:IPR038071	HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PIRSF:PIRSF000382
PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	TIGRFAMs:TIGR01371	EnsemblPlantsGene:TraesCS5B01G022800	EnsemblPlants:TraesCS5B01G022800.4
InterPro:UROD/MetE-like_sf	TIGR:cd03311	TIGR:cd03312	SEG:seg	:	:

Description

No Description!

Coordinates

chr5B:-:21181183..21186168

Molecular Weight (calculated)

85460.1 Da

IEP (calculated)

6.109

GRAVY (calculated)

-0.170

Length

772 amino acids

Sequence
(BLAST)

001: MAEAFRKMAS HIVGYPRMGP KRELKFALES FWDGKSSAED LEKVATDLRA SIWKQMADAG IKYIPSNTFS YYDQVLDTTA MLGAVPDRYS WTGGEINLST
101: YFSMARGNAT VPAMEMTKWF DTNYHFIVPE LAPSTKFSYS SHKAINEYKE AKALGVDTVP VLVGPVSYLL LSKAAKGVEK SFSPLSLLSS ILPVYKEVIA
201: ELKAAGASWI QFDEPTLVKD LESHHLSAFS AAYSELESAL SGLNVLVETY FADVPADSYK TLTSLSSVTA YGFDLERGTK TLELVKSGFP AGKYLFAGVV
301: DGRNIWADDL AASLATLQSL EAVVGKDKLV ISTSCSLMHT AVDLVNETKL DDEIKSWLAF AAQKVVEVNA LAKALAGQKD EAYFSANAAA LASRRSSPRV
401: TNEEVQKAAT ALKGSDHRRA TTVSARLDAQ QKKLNLPILP TTTIGSFPQT VELRRVRREY KAKKISEEEY TNAIKEEISK VVKIQEELDI DVLVHGEPER
501: NDMVEYFGEQ LSGFTFTANG WVQSYGSRCV KPPIIYGDVS RPNPMTVFWS KMAQSMTARP MKGMLTGPVT ILNWSFVRND QPRFETCYQI ALAIKKEVED
601: LEAGGIQVIQ IDEAALREGL PLRKSEHAFY LDWAVHSFRI TNCGVQDTTQ IHTHMCYSNF NDIIQSIINM DADVITIENS RSDEKLLSVF REGVVYGAGI
701: GPGVYDIHSP RIPSKEEIAD RVNKMLAVLD TNILWVNPDC GLKTRKYAEV KPALTNMVEA AKQIRAELAK AQ

Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Arabidopsis Description

MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.