CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88830	Canola	mitochondrion	97.42	97.42
AT5G20980.2	Thale cress	mitochondrion	87.48	87.81
CDX92419	Canola	plastid	87.24	81.16
GSMUA_Achr4P22700_001	Banana	cytosol	66.38	80.75
GSMUA_Achr5P02740_001	Banana	cytosol	66.01	80.3
PGSC0003DMT400022467	Potato	cytosol	75.21	80.13
CDY38470	Canola	cytosol	74.72	79.61
CDY25477	Canola	cytosol	74.48	79.35
CDX74207	Canola	cytosol	74.48	79.35
CDY02674	Canola	cytosol	74.36	79.22
Os12t0624000-02	Rice	extracellular	74.36	79.11
CDX92051	Canola	cytosol	74.23	79.08
CDX78767	Canola	cytosol	74.23	79.08
CDX85436	Canola	cytosol	74.11	78.95
CDX70785	Canola	cytosol	73.99	78.82
GSMUA_Achr7P01530_001	Banana	cytosol	73.99	78.72
Os12t0623900-01	Rice	extracellular	73.99	78.72
TraesCS4A01G298700.1	Wheat	cytosol	73.86	78.59
HORVU4Hr1G002270.3	Barley	cytosol	73.86	78.59
KRG89918	Soybean	endoplasmic reticulum	76.69	78.22
KXG24060	Sorghum	cytosol	73.5	78.2
Zm00001d031128_P004	Maize	plasma membrane, plastid	73.5	78.2
VIT_06s0009g01080.t01	Wine grape	plastid	77.06	78.11
Zm00001d033480_P002	Maize	extracellular	73.25	78.04
KXG37902	Sorghum	cytosol	73.13	77.91
KRH17939	Soybean	nucleus	76.44	77.58
CDY50662	Canola	cytosol	71.66	77.56
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	73.25	77.33
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	73.01	77.27
HORVU5Hr1G006780.7	Barley	cytosol	43.44	75.8
Solyc01g009180.2.1	Tomato	plastid	75.95	75.77
GSMUA_Achr4P21470_001	Banana	mitochondrion	75.34	75.52
Zm00001d013644_P001	Maize	extracellular	73.62	75.28
CDY16584	Canola	plastid	86.63	74.71
TraesCS5A01G024900.2	Wheat	cytosol	73.25	73.98
TraesCS4B01G014700.2	Wheat	vacuole	74.36	73.37
TraesCS4D01G012900.1	Wheat	mitochondrion	74.23	73.24
KRH04683	Soybean	mitochondrion	24.42	71.33

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	GO:A0A078C268	EnsemblPlants:CDX70955
ProteinID:CDX70955	ProteinID:CDX70955.1	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase	GO:GO:0003674	GO:GO:0003824
GO:GO:0003871	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008652
GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00140873001	InterPro:IPR038071
HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PANTHER:PTHR30519	PANTHER:PTHR30519:SF11
MetaCyc:PWY-5041	MetaCyc:PWY-6151	MetaCyc:PWY-6936	MetaCyc:PWY-702	SUPFAM:SSF51726	TIGRFAMs:TIGR01371
UniPathway:UPA00051	UniParc:UPI0004EF3ADE	InterPro:UROD/MetE-like_sf	SEG:seg	:	:

Description

BnaC03g10390D

Coordinates

chrLK031791:-:2922986..2928538

Molecular Weight (calculated)

90700.1 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.133

Length

815 amino acids

Sequence
(BLAST)

001: MGQLALQRVS PLASLPRRLP SLPLPSSYSP SLLFATASPR PRRHGFFLAR AMSSHIVGYP RIGPKRELKF ALESFWEGKT GVGDLQTVAA NLRNSIWKHM
101: ADAGIKYIPS NTFSYYDQML DTTAMLGAVP SRYGWKNGEI GFDVYFSMAR GNDSVPAMEM TKWFDTNYHY IVPELGPDVE FSYASHKAVD EFKEAKALGI
201: DTVPVLIGPL TYLLLSKPAK GVDKSFCTLS LIDKILPIYK EVFDDLKSAG ARWIQFDEPI LVMDLDTNQL QAFSDAYSHM ESSLAGLNVL IATYFADVPA
301: EAYKTLTSLK CVTGFGFDFV RGLETLDLIK GGFPRGKLLF AGVVDGRNIW ANDLSASLKT LQSLEEIVGK DKVVISTSCS LLHTAVDLVN EVKLDKELKS
401: WLAFAAQKVV EVNALAKSLS GVKDEALFSA NSMGQASRRS SPRVTNSAVQ QDVAAVKKSD HRRSTEVSAR LQAQQKKLNL PALPTTTIGS FPQTADLRRI
501: RREFKAKKIS DIDYVQAIKV EFEKVVKLQE ELGIDVLVHG EAERNDMVEY FGEQLSGFAF TSNGWVQSYG SRCVKPPIIY GDVTRPKAMT VFWSSMAQKM
601: TQHPMKGMLT GPVTILNWSF VRNDQPRHET CFQIALAIKD EVEDLEKAGI TVIQIDEAAL REGLPLRRSE QEFYLDWAVH AFRITNCDVQ DTTQIHTHMC
701: YSNFNDIIHS IINMDADVIT IENSRSDEKL LSVFQEGVKY CAGIGPGVYD IHSPRIPSAE EIAERINKML AVLDSKVLWV NPDCGLKTRK YSEVKSALSN
801: MVAAAKLVRS ELIKS

Best Arabidopsis Sequence Match ( AT5G20980.1 )
(BLAST)

001: MGQLALQRLQ PLASLPRRPP SLPPPSSATP SLPCATASRR PRFYVARAMS SHIVGYPRIG PKRELKFALE SFWDGKTNVD DLQNVAANLR KSIWKHMAHA
101: GIKYIPSNTF SYYDQMLDTT AMLGAVPSRY GWESGEIGFD VYFSMARGNA SAHAMEMTKW FDTNYHYIVP ELGPDVNFSY ASHKAVVEFK EAKALGIDTV
201: PVLIGPMTYL LLSKPAKGVE KSFCLLSLID KILPVYKEVL ADLKSAGARW IQFDEPILVM DLDTSQLQAF SDAYSHMESS LAGLNVLIAT YFADVPAEAY
301: KTLMSLKCVT GFGFDLVRGL ETLDLIKMNF PRGKLLFAGV VDGRNIWAND LSASLKTLQT LEDIVGKEKV VVSTSCSLLH TAVDLVNEMK LDKELKSWLA
401: FAAQKVVEVN ALAKSFSGAK DEALFSSNSM RQASRRSSPR VTNAAVQQDV DAVKKSDHHR STEVSVRLQA QQKKLNLPAL PTTTIGSFPQ TTDLRRIRRE
501: FKAKKISEVD YVQTIKEEYE KVIKLQEELG IDVLVHGEAE RNDMVEFFGE QLSGFAFTSN GWVQSYGSRC VKPPIIYGDI TRPKAMTVFW SSMAQKMTQR
601: PMKGMLTGPV TILNWSFVRN DQPRHETCFQ IALAIKDEVE DLEKAGVTVI QIDEAALREG LPLRKSEQKF YLDWAVHAFR ITNSGVQDST QIHTHMCYSN
701: FNDIIHSIID MDADVITIEN SRSDEKLLSV FHEGVKYGAG IGPGVYDIHS PRIPSTEEIA ERINKMLAVL DSKVLWVNPD CGLKTRNYSE VKSALSNMVA
801: AAKLIRSQLN KS

Arabidopsis Description

MS35-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WNZ5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.