Factsheet for TraesCS5D01G031300.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear, plasma membrane, golgi, nucleus

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, nucleus, plasma membrane, unclear
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308
unclear: 25769308
nucleus: 26228564
plasma membrane: 26897580

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26897580 doi

Y Shen, J Du, L Yue, X Zhan

College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China., College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, Jiangsu Province, 210095, People's Republic of China. xhzhan@njau.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	98.96	98.7
TraesCS5A01G024900.2	Wheat	cytosol	99.48	94.92
HORVU5Hr1G006780.7	Barley	cytosol	56.49	93.15
GSMUA_Achr4P22700_001	Banana	cytosol	77.4	88.96
GSMUA_Achr7P01530_001	Banana	cytosol	87.92	88.38
GSMUA_Achr5P02740_001	Banana	cytosol	76.49	87.91
CDY38470	Canola	cytosol	86.88	87.45
Solyc10g081510.1.1	Tomato	extracellular	86.62	87.19
CDX85436	Canola	cytosol	86.62	87.19
Bra002116.1-P	Field mustard	cytosol	86.49	87.06
Bra023645.1-P	Field mustard	cytosol	86.49	87.06
CDY25477	Canola	cytosol	86.49	87.06
CDY02674	Canola	cytosol	86.49	87.06
AT5G17920.1	Thale cress	cytosol	86.36	86.93
CDX78767	Canola	cytosol	86.36	86.93
Bra006429.1-P	Field mustard	cytosol	86.23	86.8
PGSC0003DMT400072279	Potato	cytosol, extracellular	86.1	86.67
CDX70785	Canola	cytosol	86.1	86.67
KRH06666	Soybean	nucleus	85.84	86.63
KRG94871	Soybean	cytosol	85.45	86.24
AT3G03780.2	Thale cress	cytosol	85.58	86.14
CDX74207	Canola	cytosol	85.32	85.88
TraesCS4D01G012900.1	Wheat	mitochondrion	92.08	85.84
CDX92051	Canola	cytosol	85.06	85.62
PGSC0003DMT400022467	Potato	cytosol	84.81	85.36
CDY50662	Canola	cytosol	82.34	84.2
KRH04756	Soybean	cytosol, endoplasmic reticulum, nucleus	83.25	83.79
KRH57885	Soybean	cytosol	83.12	83.66
GSMUA_Achr4P21470_001	Banana	mitochondrion	87.66	83.03
Bra001090.1-P	Field mustard	cytosol	84.94	82.89
KRH04805	Soybean	plastid	44.29	81.38
KRG89918	Soybean	endoplasmic reticulum	84.16	81.1
KRH17939	Soybean	nucleus	84.55	81.07
Solyc01g009180.2.1	Tomato	plastid	85.45	80.54
KRH63013	Soybean	cytosol	11.04	74.56
KRH04804	Soybean	endoplasmic reticulum	34.29	73.54
CDX70955	Canola	mitochondrion	77.27	73.01
CDX88830	Canola	mitochondrion	77.01	72.76
Bra006589.1-P	Field mustard	mitochondrion, plastid	77.01	72.76
AT5G20980.2	Thale cress	mitochondrion	76.36	72.41
KRH04683	Soybean	mitochondrion	25.06	69.18
CDX92419	Canola	plastid	76.62	67.35
CDY16584	Canola	plastid	76.1	62.01
KRH04746	Soybean	plastid	12.86	56.9

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0003871	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009987	GO:GO:0016740
InterPro:IPR038071	HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PIRSF:PIRSF000382
PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	TIGRFAMs:TIGR01371	EnsemblPlantsGene:TraesCS5D01G031300	EnsemblPlants:TraesCS5D01G031300.2
InterPro:UROD/MetE-like_sf	TIGR:cd03311	TIGR:cd03312	SEG:seg	:	:

Description

No Description!

Coordinates

chr5D:-:28666910..28671265

Molecular Weight (calculated)

85183.8 Da

IEP (calculated)

6.146

GRAVY (calculated)

-0.175

Length

770 amino acids

Sequence
(BLAST)

001: MPNRKMASHI VGYPRMGPKR ELKFALESFW DGKSSAEDLE KVATDLRASI WKQMADAGIK YIPSNTFSYY DQVLDTTAML GAVPDRYSWT GGEINLSTYF
101: SMARGNATVP AMEMTKWFDT NYHFIVPELA PSTKFSYSSH KAINEYKEAK ALGVDTVPVL VGPVSYLLLS KAAKGVEKSF SPLSLLSSIL PVYKEVIAEL
201: KAAGASWIQF DEPTLVKDLE SHQLSAFSAA YAELESALSG LNVLVETYFA DVPADSYKTL TSLSSVTAYG FDLERGTKTL ELVKSGFPAG KYLFAGVVDG
301: RNIWADDLAA SLATLQSLEA VVGKDKLVVS TSCSLMHTAV DLVNETKLDD EIKSWLAFAA QKVVEVNALA KALAGQKDEA YFAANAAALA SRRSSPRVTN
401: EEVQKAATAL KGSDHRRATT VSARLDAQQK KLNLPVLPTT TIGSFPQTVE LRRVRREYKA KKISEEEYTN AIKEEISKVV KIQEELDIDV LVHGEPERND
501: MVEYFGEQLS GFTFTANGWV QSYGSRCVKP PIIYGDVSRP NPMTVFWSKM AQSMTARPMK GMLTGPVTIL NWSFVRNDQP RFETCYQIAL AIKKEVEDLE
601: AGGIQVIQID EAALREGLPL RKSEHAFYLD WAVHSFRITN CGVQDTTQIH THMCYSNFND IIQSIINMDA DVITIENSRS DEKLLSVFRE GVVYGAGIGP
701: GVYDIHSPRI PSKEEIADRV NKMLAVLDTN ILWVNPDCGL KTRKYAEVKP ALTNMVEAAK QIRAELAKAQ

Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Arabidopsis Description

MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.