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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
extracellular: 22364583
plastid: 26371478
unclear: 26455813
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26583031 doi
F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 22364583 doi
P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400072279 Potato cytosol, extracellular 98.3 98.3
AT5G17920.1 Thale cress cytosol 89.41 89.41
KXG24060 Sorghum cytosol 89.28 89.16
Zm00001d031128_P004 Maize plasma membrane, plastid 89.28 89.16
CDY02674 Canola cytosol 89.02 89.02
CDX85436 Canola cytosol 89.02 89.02
KRH06666 Soybean nucleus 88.76 88.99
KRG94871 Soybean cytosol 88.76 88.99
CDY38470 Canola cytosol 88.76 88.76
Bra023645.1-P Field mustard cytosol 88.76 88.76
CDX78767 Canola cytosol 88.63 88.63
CDX74207 Canola cytosol 88.63 88.63
CDY25477 Canola cytosol 88.63 88.63
Bra002116.1-P Field mustard cytosol 88.63 88.63
AT3G03780.2 Thale cress cytosol 88.63 88.63
Bra006429.1-P Field mustard cytosol 88.5 88.5
Os12t0623900-01 Rice extracellular 88.5 88.38
CDX70785 Canola cytosol 88.37 88.37
TraesCS4A01G298700.1 Wheat cytosol 88.24 88.12
CDX92051 Canola cytosol 88.1 88.1
GSMUA_Achr4P22700_001 Banana cytosol 77.12 88.06
Os12t0624000-02 Rice extracellular 88.1 87.99
KXG37902 Sorghum cytosol 87.97 87.97
Zm00001d033480_P002 Maize extracellular 87.84 87.84
HORVU4Hr1G002270.3 Barley cytosol 87.84 87.73
GSMUA_Achr7P01530_001 Banana cytosol 87.71 87.6
KRH04756 Soybean cytosol, endoplasmic reticulum, nucleus 87.58 87.58
GSMUA_Achr5P02740_001 Banana cytosol 76.6 87.46
KRH57885 Soybean cytosol 87.45 87.45
TraesCS5D01G031300.2 Wheat golgi, mitochondrion, nucleus, plasma membrane, unclear 87.19 86.62
TraesCS5B01G022800.4 Wheat extracellular, golgi, plastid, unclear 87.32 86.53
CDY50662 Canola cytosol 84.97 86.32
Bra001090.1-P Field mustard cytosol 88.1 85.42
KRH04805 Soybean plastid 46.54 84.96
Zm00001d013644_P001 Maize extracellular 87.84 84.32
HORVU5Hr1G006780.7 Barley cytosol 50.85 83.3
TraesCS5A01G024900.2 Wheat cytosol 87.19 82.65
GSMUA_Achr4P21470_001 Banana mitochondrion 87.71 82.53
Solyc01g009180.2.1 Tomato plastid 87.84 82.25
TraesCS4B01G014700.2 Wheat vacuole 88.1 81.6
TraesCS4D01G012900.1 Wheat mitochondrion 87.97 81.48
KRH63013 Soybean cytosol 11.76 78.95
KRH04804 Soybean endoplasmic reticulum 36.21 77.16
KRH04746 Soybean plastid 12.94 56.9
Protein Annotations
KEGG:00270+2.1.1.14KEGG:00450+2.1.1.14Gene3D:3.20.20.210MapMan:4.1.2.2.6.2.1InterPro:Cbl-indep_Met_Synth_NInterPro:Cobalamin-indep_Met_synthase
GO:GO:0003674GO:GO:0003824GO:GO:0003871GO:GO:0005488GO:GO:0005575GO:GO:0005576
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0008150GO:GO:0008152
GO:GO:0008270GO:GO:0008652GO:GO:0008705GO:GO:0009058GO:GO:0009086GO:GO:0009987
GO:GO:0016740GO:GO:0032259GO:GO:0050667InterPro:IPR038071UniProt:K4D338HAMAP:MF_00172
InterPro:Met_Synth_C/arcPFAM:PF01717PFAM:PF08267PIRSF:PIRSF000382PANTHER:PTHR30519PANTHER:PTHR30519:SF11
SUPFAM:SSF51726EnsemblPlantsGene:Solyc10g081510.1EnsemblPlants:Solyc10g081510.1.1TIGRFAMs:TIGR01371UniParc:UPI00027698E8InterPro:UROD/MetE-like_sf
SEG:seg:::::
Description
No Description!
Coordinates
chr10:+:62566330..62569605
Molecular Weight (calculated)
84729.4 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.162
Length
765 amino acids
Sequence
(BLAST)
001: MASHVVGYPR MGPKRELKFA LESFWDGKSS AEDLKKVSAD LRSSIWKQMC DTGIKYIPSN TFSYYDQVLD TTAMLGAVPS RYNWTGGEIE FATYFSMARG
101: NASVPAMEMT KWFDTNYHFI VPELGPDVNF SYASHKAVNE YKEAKAQGVD TVPVLVGPVS YLLLSKPAKG VDKSFPLLSL LDKILPIYKE VIAELKAAGA
201: SWIQLDEPTL VLDLESHKLE AFTKAYADLE SSLSGLNVLV ETYFADVPAE AFKTLTALKG VTAFGFDLVR GTQTLELIKS SFPSGKYLFA GVVDGRNIWA
301: NDLAASLALL QTLEGVVGKD KLVASTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALSG AKDEAFFSAN AAAQASRKSS PRVTNEAVQK
401: ASAALQGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKISE EEYVKAITEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPIIYG DVSRPKPMTV FWSSKAQEMT KRPMKGMLTG PVTILNWSFV RNDQPRFETC YQIALAIKDE VEDLEKAGIT
601: VIQIDEAALR EGLPLRKAEH AFYLNWAVHS FRITNVGIQD TTQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSTEE IADRVNKMLA VLDTNILWVN PDCGLKTRKY TEVKPALQNM VSAAKTIRTQ LASAK
Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK
Arabidopsis Description
MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.