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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • plastid 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
 cytosol: 18757068
extracellular: 20458513
nucleus: 21132161
extracellular: 22945350
nucleus: 24385303
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 22945350 doi
C Liao, F Hochholdinger, C Li
Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.
msms PMID: 18757068 doi
NW Oehrle, AD Sarma, JK Waters, DW Emerich
United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.
msms PMID: 24385303 doi
S Komatsu, S Hiraga, MZ Nouri
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 20458513 doi
S Komatsu, Y Kobayashi, K Nishizawa, Y Nanjo, K Furukawa
National Institute of Crop Science, Kannondai 2-1-18, Tsukuba, 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG94871 Soybean cytosol 98.03 98.03
KRH04756 Soybean cytosol, endoplasmic reticulum, nucleus 91.48 91.24
KRH57885 Soybean cytosol 91.09 90.85
KRH04805 Soybean plastid 49.15 89.5
Solyc10g081510.1.1 Tomato extracellular 88.99 88.76
CDY38470 Canola cytosol 88.6 88.37
CDX85436 Canola cytosol 88.6 88.37
PGSC0003DMT400072279 Potato cytosol, extracellular 88.47 88.24
CDY02674 Canola cytosol 88.47 88.24
Bra023645.1-P Field mustard cytosol 88.34 88.1
CDY25477 Canola cytosol 88.2 87.97
Bra002116.1-P Field mustard cytosol 88.2 87.97
AT5G17920.1 Thale cress cytosol 88.2 87.97
CDX78767 Canola cytosol 87.94 87.71
Bra006429.1-P Field mustard cytosol 87.81 87.58
Os12t0623900-01 Rice extracellular 87.81 87.47
CDX70785 Canola cytosol 87.68 87.45
Os12t0624000-02 Rice extracellular 87.55 87.21
Zm00001d031128_P004 Maize plasma membrane, plastid 87.29 86.95
KXG24060 Sorghum cytosol 87.16 86.81
AT3G03780.2 Thale cress cytosol 87.02 86.8
GSMUA_Achr4P22700_001 Banana cytosol 76.15 86.72
GSMUA_Achr5P02740_001 Banana cytosol 76.02 86.57
KXG37902 Sorghum cytosol 86.76 86.54
Zm00001d033480_P002 Maize extracellular 86.63 86.41
TraesCS4A01G298700.1 Wheat cytosol 86.5 86.16
GSMUA_Achr7P01530_001 Banana cytosol 86.5 86.16
HORVU4Hr1G002270.3 Barley cytosol 86.37 86.03
CDX74207 Canola cytosol 86.24 86.01
TraesCS5D01G031300.2 Wheat golgi, mitochondrion, nucleus, plasma membrane, unclear 86.63 85.84
CDX92051 Canola cytosol 85.98 85.75
TraesCS5B01G022800.4 Wheat extracellular, golgi, plastid, unclear 86.63 85.62
CDY50662 Canola cytosol 83.88 84.99
KRH17939 Soybean nucleus 88.47 84.06
KRG89918 Soybean endoplasmic reticulum 87.81 83.85
Bra001090.1-P Field mustard cytosol 85.85 83.02
Zm00001d013644_P001 Maize extracellular 85.85 82.18
TraesCS5A01G024900.2 Wheat cytosol 86.63 81.91
HORVU5Hr1G006780.7 Barley cytosol 50.07 81.8
KRH63013 Soybean cytosol 12.19 81.58
GSMUA_Achr4P21470_001 Banana mitochondrion 86.63 81.3
KRH04804 Soybean endoplasmic reticulum 37.61 79.94
TraesCS4B01G014700.2 Wheat vacuole 86.24 79.66
TraesCS4D01G012900.1 Wheat mitochondrion 86.11 79.54
KRH04683 Soybean mitochondrion 25.82 70.61
KRH04746 Soybean plastid 13.89 60.92
Protein Annotations
KEGG:00270+2.1.1.14KEGG:00450+2.1.1.14Gene3D:3.20.20.210MapMan:4.1.2.2.6.2.1EntrezGene:547643EMBL:ACUP02009856
EMBL:AF518566InterPro:Cbl-indep_Met_Synth_NInterPro:Cobalamin-indep_Met_synthasencoils:CoilEnsemblPlantsGene:GLYMA_16G038300GO:GO:0003674
GO:GO:0003824GO:GO:0003871GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0008150GO:GO:0008152GO:GO:0008270
GO:GO:0008652GO:GO:0008705GO:GO:0009058GO:GO:0009086GO:GO:0009987GO:GO:0016740
GO:GO:0032259GO:GO:0050667InterPro:IPR038071EnsemblPlants:KRH06666ProteinID:KRH06666ProteinID:KRH06666.1
ProteinID:KRH06667.1ProteinID:KRH06668.1HAMAP:MF_00172InterPro:Met_Synth_C/arcPFAM:PF01717PFAM:PF08267
PIRSF:PIRSF000382PANTHER:PTHR30519PANTHER:PTHR30519:SF11MetaCyc:PWY-5041MetaCyc:PWY-6151MetaCyc:PWY-6936
MetaCyc:PWY-702UniProt:Q71EW8SUPFAM:SSF51726TIGRFAMs:TIGR01371UniParc:UPI000022EF4DInterPro:UROD/MetE-like_sf
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr16:+:3617280..3622647
Molecular Weight (calculated)
84286.8 Da
IEP (calculated)
6.264
GRAVY (calculated)
-0.161
Length
763 amino acids
Sequence
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKSS AEDLQKVSSD LRASIWKQMA DAGIKYIPSN TFSHYDQVLD ATATLGAVPP RYGWTGGEIG FDTYFSMARG
101: NATVPAMEMT KWFDTNYHFI VPELGPDVNF TYASHKAVDE YKEAKALGVD TVPVLVGPVT YLLLSKPAKG VEKSFSLLSL LPKVLAVYKE VIADLKAAGA
201: SWIQFDEPTL VLDLESHKLQ AFTDAYAELA PALSGLNVLV ETYFADIPAE AYKTLTSLNG VTAYGFDLVR GTNTLDLIKG GFPSGKYLFA GVVDGRNIWA
301: NDLAASLTTL QGLEGIVGKD KLVVSTSSSL LHTAVDLVNE TKLDDEIKSW LAFAAQKIVE VNALAKALSG HKDEAFFSGN AAALASRKSS PRVTNEAVQK
401: AAAALKGSDH RRATNVSARL DSQQKKLNLP ILPTTTIGSF PQTVELRRVR REFKANKISE EEYVKSIKEE IRKVVELQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT VNGWVQSYGS RCVKPPIIYG DVSRPKPMTV FWSSLAQSFT KRPMKGMLTG PVTILNWSFV RNDQPRSETT YQIALSIKDE VEDLEKAGIT
601: VIQIDEAALR EGLPLRKSEQ AHYLDWAVHA FRITNVGVQD TTQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPPTEE IADRINKMLA VLEKNILWVN PDCGLKTRKY TEVKPALTNM VAAAKLIRNE LAK
Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK
Arabidopsis Description
MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.