Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78767 | Canola | cytosol | 98.17 | 98.17 |
| Bra006429.1-P | Field mustard | cytosol | 98.04 | 98.04 |
| CDX70785 | Canola | cytosol | 97.78 | 97.78 |
| Bra002116.1-P | Field mustard | cytosol | 97.52 | 97.52 |
| CDY25477 | Canola | cytosol | 97.52 | 97.52 |
| CDY38470 | Canola | cytosol | 97.52 | 97.52 |
| Bra023645.1-P | Field mustard | cytosol | 97.12 | 97.12 |
| CDY02674 | Canola | cytosol | 97.12 | 97.12 |
| CDX85436 | Canola | cytosol | 96.86 | 96.86 |
| AT3G03780.2 | Thale cress | cytosol | 92.81 | 92.81 |
| Solyc10g081510.1.1 | Tomato | extracellular | 89.41 | 89.41 |
| PGSC0003DMT400072279 | Potato | cytosol, extracellular | 89.15 | 89.15 |
| KRH06666 | Soybean | nucleus | 87.97 | 88.2 |
| KRG94871 | Soybean | cytosol | 87.71 | 87.94 |
| Os12t0624000-02 | Rice | extracellular | 87.84 | 87.73 |
| GSMUA_Achr4P22700_001 | Banana | cytosol | 76.73 | 87.61 |
| Zm00001d031128_P004 | Maize | plasma membrane, plastid | 87.71 | 87.6 |
| Os12t0623900-01 | Rice | extracellular | 87.58 | 87.47 |
| HORVU4Hr1G002270.3 | Barley | cytosol | 87.45 | 87.34 |
| TraesCS4A01G298700.1 | Wheat | cytosol | 87.32 | 87.21 |
| KXG24060 | Sorghum | cytosol | 87.32 | 87.21 |
| KXG37902 | Sorghum | cytosol | 87.19 | 87.19 |
| Zm00001d033480_P002 | Maize | extracellular | 87.19 | 87.19 |
| GSMUA_Achr5P02740_001 | Banana | cytosol | 76.34 | 87.16 |
| GSMUA_Achr7P01530_001 | Banana | cytosol | 87.19 | 87.08 |
| KRH04756 | Soybean | cytosol, endoplasmic reticulum, nucleus | 86.67 | 86.67 |
| KRH57885 | Soybean | cytosol | 86.67 | 86.67 |
| TraesCS5D01G031300.2 | Wheat | golgi, mitochondrion, nucleus, plasma membrane, unclear | 86.93 | 86.36 |
| TraesCS5B01G022800.4 | Wheat | extracellular, golgi, plastid, unclear | 86.93 | 86.14 |
| HORVU5Hr1G006780.7 | Barley | cytosol | 51.5 | 84.37 |
| Zm00001d013644_P001 | Maize | extracellular | 86.93 | 83.44 |
| KRH04805 | Soybean | plastid | 45.62 | 83.29 |
| TraesCS5A01G024900.2 | Wheat | cytosol | 86.93 | 82.4 |
| GSMUA_Achr4P21470_001 | Banana | mitochondrion | 86.67 | 81.55 |
| TraesCS4B01G014700.2 | Wheat | vacuole | 87.45 | 80.99 |
| TraesCS4D01G012900.1 | Wheat | mitochondrion | 87.19 | 80.75 |
| KRH63013 | Soybean | cytosol | 11.76 | 78.95 |
| KRH04804 | Soybean | endoplasmic reticulum | 36.08 | 76.88 |
| AT5G20980.2 | Thale cress | mitochondrion | 79.61 | 75.0 |
| KRH04746 | Soybean | plastid | 13.2 | 58.05 |
Protein Annotations
| KEGG:00270+2.1.1.14 | KEGG:00450+2.1.1.14 | PDB:1U1H | PDB:1U1J | PDB:1U1U | PDB:1U22 |
| Gene3D:3.20.20.210 | MapMan:4.1.2.2.6.2.1 | EntrezGene:831660 | ProteinID:AED92486.1 | ProteinID:AED92487.1 | EMBL:AF370522 |
| EMBL:AJ608673 | ArrayExpress:AT5G17920 | EnsemblPlantsGene:AT5G17920 | RefSeq:AT5G17920 | TAIR:AT5G17920 | RefSeq:AT5G17920-TAIR-G |
| EnsemblPlants:AT5G17920.1 | TAIR:AT5G17920.1 | Symbol:ATCIMS | EMBL:AY048201 | EMBL:AY056098 | EMBL:AY057478 |
| EMBL:AY057499 | EMBL:AY069876 | EMBL:AY070771 | EMBL:AY091692 | ProteinID:BAB11226.1 | EMBL:BT000691 |
| InterPro:Cbl-indep_Met_Synth_N | InterPro:Cobalamin-indep_Met_synthase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003871 | GO:GO:0005488 |
| GO:GO:0005507 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005777 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0008270 | GO:GO:0008652 |
| GO:GO:0008705 | GO:GO:0009058 | GO:GO:0009086 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0010043 | GO:GO:0016020 |
| GO:GO:0016740 | GO:GO:0032259 | GO:GO:0046686 | GO:GO:0046872 | GO:GO:0048046 | GO:GO:0050667 |
| InterPro:IPR038071 | HAMAP:MF_00172 | InterPro:Met_Synth_C/arc | RefSeq:NP_001078599.1 | RefSeq:NP_197294.1 | UniProt:O50008 |
| PFAM:PF01717 | PFAM:PF08267 | PIRSF:PIRSF000382 | PO:PO:0000005 | PO:PO:0000282 | PO:PO:0000293 |
| PO:PO:0001170 | PO:PO:0005020 | PO:PO:0005052 | PO:PO:0006339 | PO:PO:0007131 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0020030 | PO:PO:0025281 | PANTHER:PTHR30519 |
| PANTHER:PTHR30519:SF11 | SUPFAM:SSF51726 | TIGRFAMs:TIGR01371 | EMBL:U97200 | UniParc:UPI0000000BAB | InterPro:UROD/MetE-like_sf |
| SEG:seg | : | : | : | : | : |
Description
MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
Coordinates
chr5:+:5935038..5939865
Molecular Weight (calculated)
84361.2 Da
IEP (calculated)
6.472
GRAVY (calculated)
-0.141
Length
765 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.