Factsheet for Bra001090.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74207	Canola	cytosol	96.2	99.22
CDX92051	Canola	cytosol	95.44	98.43
AT3G03780.2	Thale cress	cytosol	92.78	95.69
Bra002116.1-P	Field mustard	cytosol	88.85	91.63
Bra006429.1-P	Field mustard	cytosol	88.85	91.63
Bra023645.1-P	Field mustard	cytosol	88.85	91.63
Solyc10g081510.1.1	Tomato	extracellular	85.42	88.1
PGSC0003DMT400072279	Potato	cytosol, extracellular	85.17	87.84
Zm00001d033480_P002	Maize	extracellular	84.41	87.06
Os12t0623900-01	Rice	extracellular	84.16	86.68
Zm00001d031128_P004	Maize	plasma membrane, plastid	84.03	86.55
KXG37902	Sorghum	cytosol	83.9	86.54
KXG24060	Sorghum	cytosol	83.9	86.42
HORVU4Hr1G002270.3	Barley	cytosol	83.78	86.29
Os12t0624000-02	Rice	extracellular	83.78	86.29
TraesCS4A01G298700.1	Wheat	cytosol	83.65	86.16
KRH04756	Soybean	cytosol, endoplasmic reticulum, nucleus	83.52	86.14
KRH57885	Soybean	cytosol	83.4	86.01
KRG94871	Soybean	cytosol	83.02	85.85
KRH06666	Soybean	nucleus	83.02	85.85
GSMUA_Achr5P02740_001	Banana	cytosol	72.5	85.37
GSMUA_Achr4P22700_001	Banana	cytosol	72.5	85.37
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	82.89	84.94
GSMUA_Achr7P01530_001	Banana	cytosol	82.38	84.86
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	82.89	84.72
KRH04805	Soybean	plastid	44.23	83.29
Zm00001d013644_P001	Maize	extracellular	83.27	82.43
HORVU5Hr1G006780.7	Barley	cytosol	48.54	82.01
TraesCS5A01G024900.2	Wheat	cytosol	82.89	81.04
GSMUA_Achr4P21470_001	Banana	mitochondrion	82.51	80.07
TraesCS4B01G014700.2	Wheat	vacuole	83.65	79.9
TraesCS4D01G012900.1	Wheat	mitochondrion	83.52	79.78
KRH63013	Soybean	cytosol	11.15	77.19
KRH04804	Soybean	endoplasmic reticulum	35.11	77.16
Bra006589.1-P	Field mustard	mitochondrion, plastid	76.81	74.36
KRH04746	Soybean	plastid	12.67	57.47

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	EnsemblPlantsGene:Bra001090	EnsemblPlants:Bra001090.1
EnsemblPlants:Bra001090.1-P	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0008652	GO:GO:0008705	GO:GO:0009058	GO:GO:0009086	GO:GO:0009506	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009651	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0016740	GO:GO:0032259	GO:GO:0046686	GO:GO:0048046	InterPro:IPR038071	UniProt:M4CA61
HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PIRSF:PIRSF000382	PANTHER:PTHR30519
PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	UniParc:UPI0002540946	InterPro:UROD/MetE-like_sf	SEG:seg	:

Description

AT3G03780 (E=3e-241) ATMS2 | AtMS2; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ methionine synthase

Coordinates

chrA03:+:14682904..14686863

Molecular Weight (calculated)

87525.0 Da

IEP (calculated)

6.470

GRAVY (calculated)

-0.149

Length

789 amino acids

Sequence
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST ADDLKKVSAD LRSDIWKQMS AAGIKYIPSN TFAYYDQVLD TTAMLGAVPP RYGWNSGEIG FDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVKF SYASHKAVNE YKEAKALGAE TVPVLVGPVS YLLLSKLAKG VDKSFDLLSL LPKILPIYKE VIEELKGAGA
201: TWIQFDEPLF VMDLEGHKLQ AFSGAYAELE STLSGLNVLV ETYFADVPAE AYKTLTSLKG VTAFGFDLIR GTKTIDLIKS SFPEGKYLFA GVVDGRNIWA
301: NDLAASLITL QSLEGVVGKG IVSTCDPLNL SLTRCLYYLC IGADKLVVST SCSLLHTAVD LVNETKLDAE IKSWLAFAAQ KVVEVDALAK ALAGQTNQSF
401: FSANAEALSS RRSSPRVTNQ SVQKAAADLK GSDHRRATEV TARLDAQQKK LNLPILPTTT IGSFPQTVEL RRVRREYKAK KISEEDYVKA IKEEIKKVVD
501: IQEELDIDVL VHGEPERNDM VEYFGEQLSG FAFTANGWVQ SYGSRCVKPP IIYGDVSRPK PMTVFWSSTA QSMTKRPMKG MLTGPVTILN WSFVRNDQPR
601: HETCYQIALA IKDEVEDLEK GGIGVIQIDE AALREGLPLR KAEHSFYLDW AVHSFRITNC GVQDSTQIHT HMCYSHFNDI IHSIIDMDAD VITIENSRSD
701: EKLLSVFREG VKYGAGIGPG VYDIHSPRIP STDEIADRVN KMLAVLEQNI LWVNPDCGLK TRKYTEVKPA LKNMVDAAKL IRSQLSTAK

Best Arabidopsis Sequence Match ( AT3G03780.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKSS ADDLQKVSAD LRSDIWKQMS AAGIKYIPSN TFSHYDQVLD TTAMLGAVPS RYGFTSGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVKF SYASHKAVNE YKEAKALGVE TVPVLVGPVS YLLLSKLAKG VDKSFDLLSL LPKILPVYKE VIAELKAAGA
201: SWIQLDEPLF VMDLEGHKLQ AFSGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTIDLIKS GFPQGKYLFA GVVDGRNIWA
301: NDLAASLITL QSLEGVVGKD KLVVSTSCSL LHTAVDLINE TKLDAEIKSW LAFAAQKVVE VDALAKALAG QTNESFFTAN ADALSSRRSS PRVTNESVQK
401: AAAALKGSDH RRTTEVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKISE EDYVKAIKEE IKKVVDIQED LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKPMTV FWSSTAQSMT KRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKAEH SFYLDWAVHS FRITNCGVQD STQIHTHMCY SNFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSTDE IADRINKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKAM VDAAKLIRSQ LGSAK

Arabidopsis Description

MS25-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.