Factsheet for Solyc01g009180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022467	Potato	cytosol	92.29	98.56
VIT_08s0056g01570.t01	Wine grape	cytosol, extracellular	82.99	88.63
Solyc10g081510.1.1	Tomato	extracellular	82.25	87.84
HORVU4Hr1G002270.3	Barley	cytosol	82.01	87.47
GSMUA_Achr4P22700_001	Banana	cytosol	71.73	87.46
KXG37902	Sorghum	cytosol	81.76	87.32
Zm00001d031128_P004	Maize	plasma membrane, plastid	81.76	87.21
TraesCS4A01G298700.1	Wheat	cytosol	81.76	87.21
KXG24060	Sorghum	cytosol	81.76	87.21
GSMUA_Achr5P02740_001	Banana	cytosol	71.48	87.16
Os12t0624000-02	Rice	extracellular	81.64	87.08
Os12t0623900-01	Rice	extracellular	81.64	87.08
Zm00001d033480_P002	Maize	extracellular	81.52	87.06
GSMUA_Achr7P01530_001	Banana	cytosol	80.91	86.29
TraesCS5D01G031300.2	Wheat	golgi, mitochondrion, nucleus, plasma membrane, unclear	80.54	85.45
TraesCS5B01G022800.4	Wheat	extracellular, golgi, plastid, unclear	80.66	85.36
KRG89918	Soybean	endoplasmic reticulum	83.35	85.23
KRH17939	Soybean	nucleus	83.72	85.18
VIT_06s0009g01080.t01	Wine grape	plastid	83.23	84.58
Zm00001d013644_P001	Maize	extracellular	81.88	83.94
GSMUA_Achr4P21470_001	Banana	mitochondrion	81.64	82.04
TraesCS5A01G024900.2	Wheat	cytosol	80.91	81.91
HORVU5Hr1G006780.7	Barley	cytosol	46.63	81.58
TraesCS4B01G014700.2	Wheat	vacuole	81.88	80.99
TraesCS4D01G012900.1	Wheat	mitochondrion	81.64	80.75
KRH04683	Soybean	mitochondrion	26.07	76.34
AT5G20980.2	Thale cress	mitochondrion	75.77	76.23
CDX70955	Canola	mitochondrion	75.77	75.95
CDX88830	Canola	mitochondrion	75.52	75.71
Bra006589.1-P	Field mustard	mitochondrion, plastid	75.4	75.58
CDX92419	Canola	plastid	74.91	69.86
CDY16584	Canola	plastid	74.42	64.34

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	Gene3D:3.20.20.210	MapMan:4.1.2.2.6.2.1	InterPro:Cbl-indep_Met_Synth_N	InterPro:Cobalamin-indep_Met_synthase
GO:GO:0003674	GO:GO:0003824	GO:GO:0003871	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0008652	GO:GO:0008705	GO:GO:0009058	GO:GO:0009086	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	GO:GO:0050667	InterPro:IPR038071
UniProt:K4ATB4	HAMAP:MF_00172	InterPro:Met_Synth_C/arc	PFAM:PF01717	PFAM:PF08267	PANTHER:PTHR30519
PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	EnsemblPlantsGene:Solyc01g009180.2	EnsemblPlants:Solyc01g009180.2.1	TIGRFAMs:TIGR01371	UniParc:UPI0002763518
InterPro:UROD/MetE-like_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3229107..3234908

Molecular Weight (calculated)

90661.8 Da

IEP (calculated)

7.597

GRAVY (calculated)

-0.143

Length

817 amino acids

Sequence
(BLAST)

001: MLTVAKKLSS IYMRLVLPTP SSSTFLSFGS SVSVFSPPRG TQFLRLNFRF RTMASHVVGY PRMGPKRELK FALESFWDGK SNSEDLEKVA ADLRLSIWKQ
101: MADAGIKYIP SNTFSYYDQV LDTTAMLGAV PPRYGWNGGE IGFDVYFPMA RGNASVPAME MTKWFDTNYH YIVPELGPDV KFSYASHKAV SEYKEAKSLG
201: IDTVPVLVGP VSFLLLSKAA KGVEKSFPLL SLIEKILPVY KEVIAELKAA GASWIQFDEP TLVKDLDSHQ LQAFSHAYSE LESPLSGLNV LIETYFADVP
301: AEAFKTVTSL KCVTALGFDL VRGSKNLDLI KSGFPSEKYL FAGVVDGRNI WANDLAASLS TLQALENVVG KDKLVVSTSC SLLHTAVDLV NETKLDEEIK
401: SWLAFAAQKL VEVNALAKAL AGQKDEAFFS ANAAARTSRK SSPRVTNGAV QKAAAALKGS DHRRATTVSA RLEAQQKKLS LPSLPTTTIG SFPQTLELRK
501: VRREYKANKI SEEDYVKYIT EEISKVVKLQ EDLDIDVLVH GEPERNDMVE YFGEQLSGFA FTANGWVQSY GSRCVKPPII YGDVSRPKPM TVFWSSRAQS
601: MSKRPMKGML TGPVTILNWS FVRDDQPRFE TCYQIALAIK DEVEDLEKAG INVIQIDEAA LREGLPLRKS EEAFYLNWAV HSFRITNCGV QDTTQIHTHM
701: CYSNFNDIIH SIIDMDADVI TIENSRSDEK LLSVFREGVK YGAGIGPGVY DIHSQRIPST EEIADRISKM LAVLDTNILW VNPDCGLKTR KYTEVKPALS
801: NMVAAAKLLR NQLASTK

Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Arabidopsis Description

MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.