Factsheet for VIT_10s0042g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P02740_001	Banana	cytosol	39.05	15.97
GSMUA_Achr4P22700_001	Banana	cytosol	38.69	15.82
VIT_08s0056g01570.t01	Wine grape	cytosol, extracellular	43.07	15.42
GSMUA_Achr7P01530_001	Banana	cytosol	41.61	14.88
KXG37902	Sorghum	cytosol	41.24	14.77
Zm00001d033480_P002	Maize	extracellular	41.24	14.77
HORVU4Hr1G002270.3	Barley	cytosol	40.15	14.36
TraesCS4A01G298700.1	Wheat	cytosol	40.15	14.36
Zm00001d013644_P001	Maize	extracellular	40.88	14.05
VIT_06s0009g01080.t01	Wine grape	plastid	40.15	13.68
GSMUA_Achr4P21470_001	Banana	mitochondrion	40.15	13.53
TraesCS4B01G014700.2	Wheat	vacuole	40.15	13.32
TraesCS4D01G012900.1	Wheat	mitochondrion	40.15	13.32
VIT_19s0015g01260.t01	Wine grape	cytosol	5.11	5.71

Protein Annotations

KEGG:00270+2.1.1.14	KEGG:00450+2.1.1.14	EntrezGene:109123293	Gene3D:3.20.20.210	MapMan:35.1	ProteinID:CCB52121
ProteinID:CCB52121.1	UniProt:F6HIS5	EMBL:FN595766	GO:GO:0003674	GO:GO:0003824	GO:GO:0003871
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009086
GO:GO:0009987	GO:GO:0016740	GO:GO:0032259	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR038071
InterPro:Met_Synth_C/arc	PFAM:PF01717	PANTHER:PTHR30519	PANTHER:PTHR30519:SF11	SUPFAM:SSF51726	SUPFAM:SSF52029
UniParc:UPI00021087DA	InterPro:UROD/MetE-like_sf	ArrayExpress:VIT_10s0042g00970	EnsemblPlantsGene:VIT_10s0042g00970	EnsemblPlants:VIT_10s0042g00970.t01	RefSeq:XP_019078106.1

Description

No Description!

Coordinates

chr10:+:14482928..14483806

Molecular Weight (calculated)

31289.8 Da

IEP (calculated)

8.573

GRAVY (calculated)

-0.098

Length

274 amino acids

Sequence
(BLAST)

001: MSCDGAGMSF SERIPEKIFN VVVKVLKRAL KTQRFLLLRA GIKVYVIKAS GFEEDRNAAL QNLATLTGKF ITEEFGLNLE KASITVIQID EAALREVLPF
101: RKSEHAFYLD WAVHSFRITN CGVQDITQIR TRMCCSNFND IIHSIIDMDV DVITIENFRS DKKLRSLFRE RVKYGAGPDY GRISLESSLA VHRFPWENIR
201: GRISYCMNDN FHSKVLKTVK NFHLKELTAC DSSESIFKSV MSGVQAIIAY KPFANKESSP EDAQVIYVDV FFMQ

Best Arabidopsis Sequence Match ( AT5G17920.2 )
(BLAST)

001: MASHIVGYPR MGPKRELKFA LESFWDGKST AEDLQKVSAD LRSSIWKQMS AAGTKFIPSN TFAHYDQVLD TTAMLGAVPP RYGYTGGEIG LDVYFSMARG
101: NASVPAMEMT KWFDTNYHYI VPELGPEVNF SYASHKAVNE YKEAKALGVD TVPVLVGPVS YLLLSKAAKG VDKSFELLSL LPKILPIYKE VITELKAAGA
201: TWIQLDEPVL VMDLEGQKLQ AFTGAYAELE STLSGLNVLV ETYFADIPAE AYKTLTSLKG VTAFGFDLVR GTKTLDLVKA GFPEGKYLFA GVVDGRNIWA
301: NDFAASLSTL QALEGIVGKD KLVVSTSCSL LHTAVDLINE TKLDDEIKSW LAFAAQKVVE VNALAKALAG QKDEALFSAN AAALASRRSS PRVTNEGVQK
401: AAAALKGSDH RRATNVSARL DAQQKKLNLP ILPTTTIGSF PQTVELRRVR REYKAKKVSE EDYVKAIKEE IKKVVDLQEE LDIDVLVHGE PERNDMVEYF
501: GEQLSGFAFT ANGWVQSYGS RCVKPPVIYG DVSRPKAMTV FWSAMAQSMT SRPMKGMLTG PVTILNWSFV RNDQPRHETC YQIALAIKDE VEDLEKGGIG
601: VIQIDEAALR EGLPLRKSEH AFYLDWAVHS FRITNCGVQD STQIHTHMCY SHFNDIIHSI IDMDADVITI ENSRSDEKLL SVFREGVKYG AGIGPGVYDI
701: HSPRIPSSEE IADRVNKMLA VLEQNILWVN PDCGLKTRKY TEVKPALKNM VDAAKLIRSQ LASAK

Arabidopsis Description

MS15-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:O50008]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.