Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G015000.1 | Wheat | nucleus | 96.55 | 98.82 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 91.95 | 95.81 |
| EES16438 | Sorghum | nucleus | 71.84 | 75.76 |
| Zm00001d031168_P001 | Maize | plastid | 67.24 | 75.48 |
| Zm00001d041246_P001 | Maize | nucleus | 62.64 | 75.17 |
| Solyc10g051390.1.1 | Tomato | nucleus | 50.0 | 73.73 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 67.24 | 73.58 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 70.11 | 73.49 |
| KXG37870 | Sorghum | nucleus | 70.69 | 72.35 |
| Bra010693.1-P | Field mustard | nucleus | 66.67 | 70.3 |
| CDX90323 | Canola | plastid | 66.67 | 70.3 |
| PGSC0003DMT400084266 | Potato | extracellular | 64.94 | 70.19 |
| CDY42616 | Canola | cytosol | 63.22 | 70.06 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 52.87 | 69.17 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 68.39 | 68.79 |
| CDY41969 | Canola | cytosol | 50.57 | 68.75 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 63.79 | 68.52 |
| KRH29451 | Soybean | nucleus | 67.24 | 68.42 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 66.67 | 68.24 |
| KRH29453 | Soybean | nucleus | 54.6 | 67.86 |
| Solyc10g051380.1.1 | Tomato | nucleus | 50.57 | 67.69 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 59.77 | 67.1 |
| Bra001972.1-P | Field mustard | nucleus | 63.22 | 67.07 |
| AT4G39260.1 | Thale cress | nucleus | 64.94 | 66.86 |
| Bra011869.1-P | Field mustard | cytosol | 62.07 | 66.67 |
| Bra030284.1-P | Field mustard | nucleus | 64.37 | 66.67 |
| CDY72366 | Canola | nucleus | 65.52 | 66.67 |
| CDY59763 | Canola | nucleus | 63.79 | 66.47 |
| CDY15876 | Canola | nucleus | 64.37 | 66.27 |
| Bra031210.1-P | Field mustard | nucleus | 63.79 | 66.07 |
| CDY70933 | Canola | nucleus | 63.79 | 66.07 |
| CDY12133 | Canola | cytosol | 59.77 | 65.82 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 58.62 | 65.81 |
| CDY46213 | Canola | nucleus | 45.98 | 65.57 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 59.2 | 65.19 |
| KRH29452 | Soybean | nucleus | 58.05 | 64.74 |
| CDX71276 | Canola | nucleus | 63.79 | 64.53 |
| PGSC0003DMT400084290 | Potato | nucleus | 61.49 | 64.46 |
| PGSC0003DMT400084258 | Potato | nucleus | 61.49 | 64.46 |
| PGSC0003DMT400083014 | Potato | nucleus | 61.49 | 64.46 |
| AT2G21660.1 | Thale cress | nucleus | 63.79 | 63.07 |
| Solyc01g109660.2.1 | Tomato | extracellular | 63.22 | 62.86 |
| PGSC0003DMT400001879 | Potato | cytosol | 63.22 | 62.5 |
| KRH51528 | Soybean | nucleus | 64.94 | 62.09 |
| KRH29454 | Soybean | nucleus | 59.2 | 60.59 |
| KRH60842 | Soybean | mitochondrion | 61.49 | 57.84 |
| TraesCS3D01G417800.1 | Wheat | plastid | 43.1 | 42.61 |
| TraesCS5D01G516500.1 | Wheat | nucleus | 40.23 | 31.53 |
| TraesCS7D01G323600.1 | Wheat | nucleus | 41.38 | 31.3 |
| TraesCS3D01G539400.1 | Wheat | mitochondrion | 19.54 | 31.19 |
| TraesCS3D01G424100.1 | Wheat | mitochondrion | 39.08 | 31.05 |
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 22.99 | 28.78 |
| TraesCS4D01G205200.1 | Wheat | mitochondrion | 16.67 | 27.88 |
| TraesCS5D01G473100.1 | Wheat | mitochondrion | 47.13 | 26.8 |
| TraesCS2D01G217900.1 | Wheat | mitochondrion | 20.69 | 25.71 |
| TraesCS2D01G184200.1 | Wheat | mitochondrion | 45.4 | 24.31 |
| TraesCS4D01G205500.1 | Wheat | plastid | 23.56 | 23.84 |
| TraesCS2D01G238900.1 | Wheat | nucleus | 39.66 | 23.55 |
| TraesCS4D01G023800.2 | Wheat | nucleus | 40.8 | 22.33 |
| TraesCS6D01G273200.1 | Wheat | plastid | 18.97 | 8.46 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G020900.1 | EnsemblPlantsGene:TraesCS5D01G020900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44202 |
| PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:cd12399 |
| MapMan:16.7.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:13718958..13719622
Molecular Weight (calculated)
16957.0 Da
IEP (calculated)
5.199
GRAVY (calculated)
-0.881
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETEYRCFV GGLAWATDDH NLQQAFSQYG EILDAKIIND RETGRSRGFG FVTFGSEESM RQAIEEMNGK ELDGRNITVN EAQSRRSGGG GGGGGYGGQR
101: GGSGGYGGGG GGYGGQGGGG YGQGGGGGYG QGGGGYGGQR GGGGYGGGGG GYGGGGGGYG GQRGGGDSGG QWRN
101: GGSGGYGGGG GGYGGQGGGG YGQGGGGGYG QGGGGYGGQR GGGGYGGGGG GYGGGGGGYG GQRGGGDSGG QWRN
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.