Factsheet for TraesCS6D01G273200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G292000.1	Wheat	plastid	94.87	95.36
TraesCS6B01G322400.1	Wheat	plastid	94.1	94.59
Os02t0730800-01	Rice	plastid	75.13	73.43
KXG30823	Sorghum	plastid	71.28	69.33
Zm00001d017930_P003	Maize	plastid	67.95	64.48
GSMUA_Achr2P01230_001	Banana	nucleus	50.26	62.82
KRG92035	Soybean	plastid	50.77	50.77
Bra031244.1-P	Field mustard	plastid	46.67	48.79
Solyc11g007160.1.1	Tomato	plastid	50.0	48.75
AT3G20930.2	Thale cress	plastid	47.18	48.55
CDY19589	Canola	plastid	46.41	48.53
VIT_13s0106g00500.t01	Wine grape	plastid	50.77	48.41
PGSC0003DMT400050134	Potato	plastid	49.49	48.25
CDY06395	Canola	nucleus	47.69	46.73
TraesCS4D01G205200.1	Wheat	mitochondrion	8.72	32.69
TraesCS2D01G217900.1	Wheat	mitochondrion	10.77	30.0
TraesCS2D01G294000.1	Wheat	mitochondrion	10.26	28.78
TraesCS3D01G539400.1	Wheat	mitochondrion	7.95	28.44
TraesCS4D01G205500.1	Wheat	plastid	11.79	26.74
TraesCS6D01G199100.1	Wheat	nucleus	8.97	22.58
TraesCS3D01G417800.1	Wheat	plastid	9.74	21.59
TraesCS4D01G018500.1	Wheat	nucleus	8.72	20.48
TraesCS5D01G020900.1	Wheat	plastid	8.46	18.97
TraesCS3D01G424100.1	Wheat	mitochondrion	10.51	18.72
TraesCS5D01G516500.1	Wheat	nucleus	8.46	14.86
TraesCS7D01G323600.1	Wheat	nucleus	8.72	14.78
TraesCS2D01G184200.1	Wheat	mitochondrion	11.03	13.23
TraesCS5D01G473100.1	Wheat	mitochondrion	9.74	12.42
TraesCS2D01G238900.1	Wheat	nucleus	7.95	10.58
TraesCS4D01G023800.2	Wheat	nucleus	8.46	10.38

Protein Annotations

EnsemblPlants:TraesCS6D01G273200.1	EnsemblPlantsGene:TraesCS6D01G273200	Gene3D:3.30.70.330	Gene3D:3.30.70.80	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR037045	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:S8pro/Inhibitor_I9_sf	PANTHER:PTHR31346	PANTHER:PTHR31346:SF9	PFAM:PF00076	PFscan:PS50102
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	MapMan:16.12.5.2	:	:

Description

No Description!

Coordinates

chr6D:+:382075181..382078669

Molecular Weight (calculated)

42908.5 Da

IEP (calculated)

5.343

GRAVY (calculated)

-0.332

Length

390 amino acids

Sequence
(BLAST)

001: MDAVRSFLLG GGLTVSTATG ATAQTTSIPH ISPSSLPWAT RRRFHRLAAA ASPHSQLPAS STRPRCSRWV VVMDDPPEPE GGGEVSRAEA VDYYVATLAR
101: VLGSEQEAQM CIYDASWDRS YEFCCEIDEE ASKKLAKMPG VLAVTMVKDD VSEKDNLSSS LSPANLASFS DAACNHSSSE KSEFWLVRME KPGVEVVTKA
201: QMVDHYTQIL MKVVGNEKDA QVSIYHVSWE ENYGFCCHID EECAKELADV PGVISVLPDS NFGSDKKDYR VSGDDSSKPS EATQVADVKA KRLFVTGLSF
301: YTSEKTLREA FEPFGELVEV KIIMDRISKR SKGYAFIEYT TEEAGGAALK AMNGEIINGW MIVVDIAKTK SRDQKTPFGT SSFRPRFHSR

Best Arabidopsis Sequence Match ( AT3G20930.1 )
(BLAST)

001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.