Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19589 | Canola | plastid | 88.44 | 94.37 |
| AT3G20930.2 | Thale cress | plastid | 78.64 | 82.59 |
| GSMUA_Achr2P01230_001 | Banana | nucleus | 47.74 | 60.9 |
| KRG92035 | Soybean | plastid | 54.77 | 55.9 |
| VIT_13s0106g00500.t01 | Wine grape | plastid | 53.52 | 52.08 |
| Solyc11g007160.1.1 | Tomato | plastid | 51.01 | 50.75 |
| PGSC0003DMT400050134 | Potato | plastid | 50.75 | 50.5 |
| TraesCS6B01G322400.1 | Wheat | plastid | 47.24 | 48.45 |
| TraesCS6A01G292000.1 | Wheat | plastid | 47.24 | 48.45 |
| TraesCS6D01G273200.1 | Wheat | plastid | 46.73 | 47.69 |
| KXG30823 | Sorghum | plastid | 47.49 | 47.13 |
| Os02t0730800-01 | Rice | plastid | 46.73 | 46.62 |
| Zm00001d017930_P003 | Maize | plastid | 44.22 | 42.82 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 9.55 | 39.58 |
| CDY09244 | Canola | mitochondrion | 8.29 | 31.73 |
| CDY14089 | Canola | mitochondrion | 11.06 | 30.14 |
| CDY04982 | Canola | mitochondrion | 11.06 | 30.14 |
| CDY06468 | Canola | mitochondrion | 11.06 | 29.73 |
| CDY31588 | Canola | nucleus | 5.78 | 29.49 |
| CDY47311 | Canola | mitochondrion | 10.55 | 29.17 |
| CDY08312 | Canola | mitochondrion | 11.06 | 28.76 |
| CDX74955 | Canola | plastid | 10.3 | 28.28 |
| CDX91368 | Canola | plastid | 10.3 | 28.28 |
| CDY47314 | Canola | mitochondrion | 10.55 | 28.0 |
| CDY53035 | Canola | mitochondrion | 10.55 | 27.81 |
| CDY64931 | Canola | plastid | 10.55 | 27.45 |
| CDY42466 | Canola | plastid | 10.55 | 27.45 |
| CDY46213 | Canola | nucleus | 8.04 | 26.23 |
| CDY43035 | Canola | plastid | 10.05 | 26.14 |
| CDY43820 | Canola | plastid | 10.05 | 25.48 |
| CDY19230 | Canola | mitochondrion | 8.54 | 24.46 |
| CDY35978 | Canola | mitochondrion, plastid | 8.54 | 23.78 |
| CDY28003 | Canola | plastid | 8.54 | 23.61 |
| CDY31170 | Canola | mitochondrion, nucleus | 7.79 | 23.48 |
| CDY41969 | Canola | cytosol | 7.54 | 23.44 |
| CDX83260 | Canola | mitochondrion | 7.79 | 23.13 |
| CDX82164 | Canola | mitochondrion | 8.29 | 22.76 |
| CDY26743 | Canola | mitochondrion | 8.29 | 22.3 |
| CDX71070 | Canola | mitochondrion | 8.29 | 21.71 |
| CDY51614 | Canola | mitochondrion | 7.79 | 21.38 |
| CDY72366 | Canola | nucleus | 8.79 | 20.47 |
| CDY15876 | Canola | nucleus | 8.54 | 20.12 |
| CDY42616 | Canola | cytosol | 7.54 | 19.11 |
| CDY12133 | Canola | cytosol | 7.29 | 18.35 |
| CDX90323 | Canola | plastid | 7.54 | 18.18 |
| CDX71276 | Canola | nucleus | 7.79 | 18.02 |
| CDY70933 | Canola | nucleus | 7.54 | 17.86 |
| CDY59763 | Canola | nucleus | 7.29 | 17.37 |
| CDX83617 | Canola | nucleus | 9.55 | 16.38 |
| CDY13632 | Canola | nucleus | 9.55 | 15.9 |
| CDY52166 | Canola | nucleus | 9.55 | 15.64 |
| CDY65478 | Canola | endoplasmic reticulum | 8.04 | 15.38 |
| CDY42426 | Canola | mitochondrion | 9.3 | 15.29 |
| CDY48990 | Canola | nucleus | 9.3 | 15.23 |
| CDY49123 | Canola | mitochondrion | 9.3 | 13.91 |
| CDX73070 | Canola | mitochondrion | 9.3 | 13.7 |
| CDX96526 | Canola | mitochondrion | 9.3 | 13.31 |
| CDY16825 | Canola | plastid | 8.79 | 13.31 |
| CDX87197 | Canola | plastid | 9.3 | 11.25 |
| CDY02175 | Canola | mitochondrion | 9.3 | 10.91 |
| CDY11283 | Canola | nucleus | 6.53 | 8.5 |
| CDY34132 | Canola | nucleus | 5.28 | 8.24 |
| CDX80910 | Canola | nucleus | 3.52 | 5.36 |
Protein Annotations
| MapMan:16.12.5.2 | Gene3D:3.30.70.330 | GO:A0A078EWF1 | EnsemblPlants:CDY06395 | ProteinID:CDY06395 | ProteinID:CDY06395.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00122366001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR31346 | PANTHER:PTHR31346:SF9 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EBBAED | SEG:seg |
Description
BnaC05g31350D
Coordinates
chrLK031969:+:314276..316407
Molecular Weight (calculated)
44230.5 Da
IEP (calculated)
7.275
GRAVY (calculated)
-0.313
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MITKKRAEER KQSSRKKLEG VPMEALIASA SFFLPISNSS SLIVNNRLFP SSSFSPNIKF GNFRKNHLSF SSHLVYSSSA VSAPSSSSST LSRNTYWMVV
101: LDKPPQGVSS KSDIVDYYVE ILAKVLGNEK DAQMSIYDAS FDTHFGFCCH IDEDASRQLV SLPGVLSVRP EADYSSGNKN YGIGKQAGVS LFDHGTVKHW
201: MVRIDKPGVG IVTKAQMVDH CVQLLSKVLW NEKDAQMCLY HVSWQSKHGF CCDLDETCAE ELAGVPGVLA VVPDNNFESL NKDYEGDNST QEDSRESSES
301: PPVKTKKLFI TGLSFYTSEK TLRAAFEGFG ELVEVKIIMD KISKRSKGYA FIEYTTEEAA SVALKEMNGK IINGWMIVVD VAKTKPFRHN RRETSSEL
101: LDKPPQGVSS KSDIVDYYVE ILAKVLGNEK DAQMSIYDAS FDTHFGFCCH IDEDASRQLV SLPGVLSVRP EADYSSGNKN YGIGKQAGVS LFDHGTVKHW
201: MVRIDKPGVG IVTKAQMVDH CVQLLSKVLW NEKDAQMCLY HVSWQSKHGF CCDLDETCAE ELAGVPGVLA VVPDNNFESL NKDYEGDNST QEDSRESSES
301: PPVKTKKLFI TGLSFYTSEK TLRAAFEGFG ELVEVKIIMD KISKRSKGYA FIEYTTEEAA SVALKEMNGK IINGWMIVVD VAKTKPFRHN RRETSSEL
001: MEALIASTSF FVPISNSSSS HIINNRFFPS FYSPNLNFGT FRKTSLSSSH LVFSSSAISA PPSSTVLTRN SYWMVLLDKP PHWVSSKSAM VDYYVEILAK
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL
101: VLGNEKDAQV SIYDASFDTH FGFCCHIDED ASRQLASLPG VVSIRPEQDY SSEKKNYGIG SHKGVSLFDH GTVKHWMVRI DKPGVGIVTK AQMVDHCVQL
201: LSKVLWNEKD AQMCLYHVSW QSDFGFCCDL DERSAVELAG VPGVLAVVPD NSFESLNKDY EGDSTQDSRD QDDSESPPVK TKKLFITGLS FYTSEKTLRA
301: AFEGFGELVE VKIIMDKISK RSKGYAFLEY TTEEAAGTAL KEMNGKIING WMIVVDVAKT KPFRQNRSQP SFGL
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.