CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96526	Canola	mitochondrion	96.67	93.88
Bra015926.1-P	Field mustard	mitochondrion	97.41	92.28
CDY49123	Canola	mitochondrion	89.26	90.6
CDY42426	Canola	mitochondrion	80.37	89.67
AT1G74230.1	Thale cress	mitochondrion, plastid	87.04	81.31
CDX82164	Canola	mitochondrion	41.85	77.93
CDY51614	Canola	mitochondrion	38.89	72.41
CDY06468	Canola	mitochondrion	30.0	54.73
CDY08312	Canola	mitochondrion	30.0	52.94
CDY53035	Canola	mitochondrion	28.89	51.66
CDY47311	Canola	mitochondrion	27.41	51.39
CDY47314	Canola	mitochondrion	28.52	51.33
CDY15876	Canola	nucleus	30.74	49.11
CDY16825	Canola	plastid	47.78	49.05
CDY72366	Canola	nucleus	30.37	47.95
CDY42616	Canola	cytosol	27.41	47.13
CDY59763	Canola	nucleus	28.89	46.71
CDX90323	Canola	plastid	28.52	46.67
Solyc10g081180.1.1	Tomato	nucleus	37.41	45.91
CDY70933	Canola	nucleus	28.52	45.83
CDY41969	Canola	cytosol	21.48	45.31
CDY26743	Canola	mitochondrion	24.44	44.59
CDY46213	Canola	nucleus	20.0	44.26
CDY12133	Canola	cytosol	25.56	43.67
CDY19230	Canola	mitochondrion	22.22	43.17
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	41.48	42.59
CDX71276	Canola	nucleus	27.04	42.44
CDY02175	Canola	mitochondrion	51.11	40.71
CDY65478	Canola	endoplasmic reticulum	31.11	40.38
CDX87197	Canola	plastid	48.89	40.12
CDY04982	Canola	mitochondrion	18.89	34.93
CDY14089	Canola	mitochondrion	18.52	34.25
CDY28003	Canola	plastid	17.41	32.64
CDY09244	Canola	mitochondrion	12.22	31.73
CDY31588	Canola	nucleus	8.89	30.77
CDY35978	Canola	mitochondrion, plastid	15.56	29.37
CDX83260	Canola	mitochondrion	14.07	28.36
CDX91368	Canola	plastid	15.19	28.28
CDX74955	Canola	plastid	15.19	28.28
CDX82066	Canola	cytosol, nucleus, plastid	10.0	28.12
CDY31170	Canola	mitochondrion, nucleus	13.7	28.03
CDY42466	Canola	plastid	15.56	27.45
CDY43035	Canola	plastid	14.81	26.14
CDY64931	Canola	plastid	14.81	26.14
CDY43820	Canola	plastid	14.81	25.48
CDX71070	Canola	mitochondrion	12.96	23.03
CDX83617	Canola	nucleus	19.63	22.84
CDY48990	Canola	nucleus	20.0	22.22
CDY13632	Canola	nucleus	19.63	22.18
CDY52166	Canola	nucleus	19.63	21.81
CDY11283	Canola	nucleus	20.37	17.97
CDY34132	Canola	nucleus	15.56	16.47
CDX80910	Canola	nucleus	14.44	14.94
CDY19589	Canola	plastid	14.07	10.19
CDY06395	Canola	nucleus	13.7	9.3

Protein Annotations

EnsemblPlants:CDX73070	EnsemblPlantsGene:GSBRNA2T00103519001	Gene3D:3.30.70.330	GO:A0A078C8G2	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR45502	PFAM:PF00076	PFscan:PS50102	PRINTS:PR01228	ProteinID:CDX73070	ProteinID:CDX73070.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EECBF0	MapMan:16.12.5.2	:

Description

BnaC06g35180D

Coordinates

chrLK031797:+:1932590..1934787

Molecular Weight (calculated)

26875.2 Da

IEP (calculated)

4.439

GRAVY (calculated)

-0.508

Length

270 amino acids

Sequence
(BLAST)

001: MAFLSKVGKI FRQTSAHVTA SNSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGNAG GYGAPAGGYG GGGGAGGYGA PAGGYGGGSS YGGNAAGGGG YGGNSPYGGN AVGGGYGVAG GVGGSDNFAQ
201: GSSSNAGFDD KFSSSETLGN DTDHQLESAG VEEQFGGSDN QFGDSENGQT EVGGPDGFDQ TDDGDVAKKA

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.