Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001972.1-P | Field mustard | nucleus | 94.19 | 98.78 |
| CDY46213 | Canola | nucleus | 69.77 | 98.36 |
| CDY41969 | Canola | cytosol | 55.81 | 75.0 |
| Solyc10g051390.1.1 | Tomato | nucleus | 51.16 | 74.58 |
| CDY15876 | Canola | nucleus | 70.35 | 71.6 |
| CDX90323 | Canola | plastid | 68.6 | 71.52 |
| CDY42616 | Canola | cytosol | 65.12 | 71.34 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 66.86 | 70.99 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 54.65 | 70.68 |
| CDY72366 | Canola | nucleus | 69.77 | 70.18 |
| Solyc10g051380.1.1 | Tomato | nucleus | 52.33 | 69.23 |
| Zm00001d031168_P001 | Maize | plastid | 62.21 | 69.03 |
| EES16438 | Sorghum | nucleus | 65.7 | 68.48 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 61.63 | 68.39 |
| CDY12133 | Canola | cytosol | 62.21 | 67.72 |
| Zm00001d041246_P001 | Maize | nucleus | 56.98 | 67.59 |
| Os12t0632000-01 | Rice | nucleus | 63.37 | 67.28 |
| CDY70933 | Canola | nucleus | 65.7 | 67.26 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 65.12 | 67.07 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 63.37 | 66.87 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 61.63 | 66.67 |
| CDY59763 | Canola | nucleus | 64.53 | 66.47 |
| PGSC0003DMT400083014 | Potato | nucleus | 63.95 | 66.27 |
| PGSC0003DMT400084258 | Potato | nucleus | 63.95 | 66.27 |
| PGSC0003DMT400084290 | Potato | nucleus | 63.95 | 66.27 |
| TraesCS4A01G293000.1 | Wheat | plastid | 62.21 | 66.05 |
| KRH29452 | Soybean | nucleus | 59.88 | 66.03 |
| KRH29453 | Soybean | nucleus | 53.49 | 65.71 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 63.37 | 65.66 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 64.53 | 65.29 |
| PGSC0003DMT400084266 | Potato | extracellular | 60.47 | 64.6 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 59.3 | 64.56 |
| PGSC0003DMT400001879 | Potato | cytosol | 65.7 | 64.2 |
| Solyc01g109660.2.1 | Tomato | extracellular | 65.12 | 64.0 |
| TraesCS5D01G020900.1 | Wheat | plastid | 64.53 | 63.79 |
| KRH51528 | Soybean | nucleus | 67.44 | 63.74 |
| KRH29451 | Soybean | nucleus | 62.79 | 63.16 |
| KXG37870 | Sorghum | nucleus | 62.21 | 62.94 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 55.81 | 61.94 |
| KRH29454 | Soybean | nucleus | 61.05 | 61.76 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 61.05 | 61.76 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 58.14 | 61.73 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 57.56 | 61.11 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 56.98 | 60.49 |
| KRH60842 | Soybean | mitochondrion | 63.95 | 59.46 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 52.91 | 52.6 |
| Os03t0670700-01 | Rice | nucleus | 55.23 | 48.47 |
| CDY47314 | Canola | mitochondrion | 41.86 | 48.0 |
| CDY53035 | Canola | mitochondrion | 41.86 | 47.68 |
| CDY47311 | Canola | mitochondrion | 38.95 | 46.53 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 26.16 | 45.45 |
| CDY06468 | Canola | mitochondrion | 37.79 | 43.92 |
| CDY08312 | Canola | mitochondrion | 38.37 | 43.14 |
| CDY26743 | Canola | mitochondrion | 33.72 | 39.19 |
| CDY19230 | Canola | mitochondrion | 30.81 | 38.13 |
| CDY31588 | Canola | nucleus | 14.53 | 32.05 |
| CDX82164 | Canola | mitochondrion | 26.74 | 31.72 |
| CDY09244 | Canola | mitochondrion | 18.6 | 30.77 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 16.28 | 29.17 |
| CDY51614 | Canola | mitochondrion | 24.42 | 28.97 |
| CDY52166 | Canola | nucleus | 40.7 | 28.81 |
| CDY48990 | Canola | nucleus | 40.7 | 28.81 |
| CDX83617 | Canola | nucleus | 38.37 | 28.45 |
| CDY13632 | Canola | nucleus | 38.95 | 28.03 |
| CDY49123 | Canola | mitochondrion | 42.44 | 27.44 |
| CDX96526 | Canola | mitochondrion | 44.19 | 27.34 |
| CDX73070 | Canola | mitochondrion | 42.44 | 27.04 |
| CDY04982 | Canola | mitochondrion | 22.67 | 26.71 |
| CDY14089 | Canola | mitochondrion | 22.67 | 26.71 |
| CDY16825 | Canola | plastid | 40.7 | 26.62 |
| CDX74955 | Canola | plastid | 22.09 | 26.21 |
| CDX91368 | Canola | plastid | 22.09 | 26.21 |
| CDY42426 | Canola | mitochondrion | 36.63 | 26.03 |
| CDY28003 | Canola | plastid | 20.93 | 25.0 |
| CDY64931 | Canola | plastid | 20.35 | 22.88 |
| CDY42466 | Canola | plastid | 20.35 | 22.88 |
| CDY43035 | Canola | plastid | 20.35 | 22.88 |
| CDY35978 | Canola | mitochondrion, plastid | 18.6 | 22.38 |
| CDY43820 | Canola | plastid | 20.35 | 22.29 |
| CDX87197 | Canola | plastid | 40.7 | 21.28 |
| CDY02175 | Canola | mitochondrion | 41.86 | 21.24 |
| CDY31170 | Canola | mitochondrion, nucleus | 16.28 | 21.21 |
| CDY11283 | Canola | nucleus | 37.21 | 20.91 |
| CDX83260 | Canola | mitochondrion | 16.28 | 20.9 |
| CDY65478 | Canola | endoplasmic reticulum | 24.42 | 20.19 |
| CDY34132 | Canola | nucleus | 29.65 | 20.0 |
| CDX71070 | Canola | mitochondrion | 17.44 | 19.74 |
| CDX80910 | Canola | nucleus | 25.58 | 16.86 |
| CDY19589 | Canola | plastid | 18.6 | 8.58 |
| CDY06395 | Canola | nucleus | 18.02 | 7.79 |
Protein Annotations
| EnsemblPlants:CDX71276 | EnsemblPlantsGene:GSBRNA2T00144896001 | Gene3D:3.30.70.330 | GO:A0A078C2L3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44202 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX71276 | ProteinID:CDX71276.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEF04D | MapMan:16.7.2 | : | : |
Description
BnaC07g05550D
Coordinates
chrLK031792:+:2257377..2258489
Molecular Weight (calculated)
17348.4 Da
IEP (calculated)
4.595
GRAVY (calculated)
-0.926
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAESEYRC FVGGLAWATD EQSLGRTFSE FGEVLDSKII IDRETGRSKG FGFVTFKDEE SMRAAIERMN GQELDGRNIT VNEAQAQSSR GGNGGGYNRG
101: GGGYGGGGYG GGGGYGSGGG GYGGRRDQGG YGGGGGEYGG GGYGGGRREG GYGGGGGDGG YGGRSDSGNW RE
101: GGGYGGGGYG GGGGYGSGGG GYGGRRDQGG YGGGGGEYGG GGYGGGRREG GYGGGGGDGG YGGRSDSGNW RE
1: MSEVEYRCFV GGLAWATNDE DLQRTFSQFG DVIDSKIIND RESGRSRGFG FVTFKDEKAM RDAIEEMNGK ELDGRVITVN EAQSRGSGGG GW
Arabidopsis Description
RBG8Glycine-rich RNA-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q03251]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.