Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
22364583
extracellular: 22892874 plastid: 22908117 nucleus: 25464976 plastid: 26371478 nucleus: 28394025 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
22892874
doi
Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001879 | Potato | cytosol | 96.57 | 96.02 |
| Solyc10g051390.1.1 | Tomato | nucleus | 54.86 | 81.36 |
| Solyc10g051380.1.1 | Tomato | nucleus | 58.86 | 79.23 |
| Bra030284.1-P | Field mustard | nucleus | 73.71 | 76.79 |
| KRH29451 | Soybean | nucleus | 74.86 | 76.61 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 70.86 | 76.54 |
| CDY15876 | Canola | nucleus | 73.71 | 76.33 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 57.71 | 75.94 |
| CDY59763 | Canola | nucleus | 72.0 | 75.45 |
| CDY72366 | Canola | nucleus | 73.14 | 74.85 |
| Bra031210.1-P | Field mustard | nucleus | 71.43 | 74.4 |
| CDY70933 | Canola | nucleus | 71.43 | 74.4 |
| KRH51528 | Soybean | nucleus | 77.14 | 74.18 |
| AT2G21660.1 | Thale cress | nucleus | 74.29 | 73.86 |
| KRH29453 | Soybean | nucleus | 58.86 | 73.57 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 71.43 | 73.53 |
| CDY41969 | Canola | cytosol | 53.71 | 73.44 |
| KRH29452 | Soybean | nucleus | 65.14 | 73.08 |
| CDY42616 | Canola | cytosol | 65.14 | 72.61 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 64.0 | 72.26 |
| CDX90323 | Canola | plastid | 68.0 | 72.12 |
| Bra010693.1-P | Field mustard | nucleus | 68.0 | 72.12 |
| Zm00001d041246_P001 | Maize | nucleus | 59.43 | 71.72 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 64.57 | 71.52 |
| AT4G39260.1 | Thale cress | nucleus | 68.57 | 71.01 |
| KRH29454 | Soybean | nucleus | 68.0 | 70.0 |
| TraesCS4B01G020300.1 | Wheat | extracellular | 65.14 | 69.94 |
| TraesCS4A01G293000.1 | Wheat | plastid | 64.57 | 69.75 |
| KRH60842 | Soybean | mitochondrion | 73.71 | 69.73 |
| Zm00001d031168_P001 | Maize | plastid | 61.71 | 69.68 |
| Bra011869.1-P | Field mustard | cytosol | 64.0 | 69.14 |
| Bra001972.1-P | Field mustard | nucleus | 64.57 | 68.9 |
| Os12t0632000-01 | Rice | nucleus | 63.43 | 68.52 |
| CDY12133 | Canola | cytosol | 61.71 | 68.35 |
| TraesCS4D01G018500.1 | Wheat | nucleus | 64.57 | 68.07 |
| EES16438 | Sorghum | nucleus | 64.0 | 67.88 |
| CDY46213 | Canola | nucleus | 46.86 | 67.21 |
| TraesCS6A01G216500.1 | Wheat | nucleus | 61.71 | 66.67 |
| TraesCS5B01G013200.1 | Wheat | nucleus | 63.43 | 66.47 |
| TraesCS6B01G246400.1 | Wheat | nucleus | 61.14 | 66.05 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 60.0 | 66.04 |
| TraesCS6D01G199100.1 | Wheat | nucleus | 58.29 | 65.81 |
| HORVU6Hr1G055440.1 | Barley | nucleus | 60.57 | 65.43 |
| KXG37870 | Sorghum | nucleus | 63.43 | 65.29 |
| CDX71276 | Canola | nucleus | 64.0 | 65.12 |
| TraesCS5A01G015000.1 | Wheat | nucleus | 62.29 | 64.12 |
| TraesCS5D01G020900.1 | Wheat | plastid | 62.86 | 63.22 |
| HORVU5Hr1G002150.1 | Barley | nucleus | 50.29 | 50.87 |
| Os03t0670700-01 | Rice | nucleus | 55.43 | 49.49 |
| Solyc09g092320.2.1 | Tomato | mitochondrion, nucleus | 32.57 | 49.14 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 25.14 | 44.44 |
| Solyc05g053780.2.1 | Tomato | mitochondrion | 38.86 | 42.24 |
| Solyc10g081180.1.1 | Tomato | nucleus | 45.71 | 36.36 |
| Solyc02g066930.2.1 | Tomato | nucleus | 38.29 | 31.02 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 22.86 | 31.01 |
| Solyc10g047130.1.1 | Tomato | nucleus | 38.86 | 28.45 |
| Solyc01g104840.2.1 | Tomato | nucleus | 35.43 | 27.8 |
| Solyc10g084630.1.1 | Tomato | mitochondrion | 21.14 | 26.81 |
| Solyc07g049270.2.1 | Tomato | mitochondrion | 21.14 | 26.24 |
| Solyc09g011210.2.1 | Tomato | plastid | 19.43 | 25.76 |
| Solyc07g063900.2.1 | Tomato | plastid | 21.14 | 24.5 |
| Solyc03g071560.2.1 | Tomato | nucleus | 41.71 | 23.25 |
| Solyc06g035610.2.1 | Tomato | mitochondrion | 17.14 | 20.83 |
| Solyc02g088790.2.1 | Tomato | extracellular, plastid | 42.86 | 20.11 |
| Solyc11g008210.1.1 | Tomato | nucleus | 33.71 | 20.0 |
| Solyc11g007160.1.1 | Tomato | plastid | 19.43 | 8.5 |
Protein Annotations
| EnsemblPlants:Solyc01g109660.2.1 | EnsemblPlantsGene:Solyc01g109660.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45429 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0002768B99 | UniProt:K4B3H9 | MapMan:16.7.2 | : | : | : |
Description
No Description!
Coordinates
chr1:+:96560713..96561995
Molecular Weight (calculated)
17344.5 Da
IEP (calculated)
5.324
GRAVY (calculated)
-0.955
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVEYRCFV GGLAWATTDQ TLSEAFSQYG EVVESKIIND RETGRSRGFG FVTFKDEQAM RDAIEGMNGQ DLDGRNITVN EAQSRGGGGG GGGRGGGGYG
101: GGRREGGGGG YGGGGGYGGG RREGGGGGYG GGGYGGGRRE GGYGGGGGGY GGGDRYNDRS SRGGGGGGSD GNWRN
101: GGRREGGGGG YGGGGGYGGG RREGGGGGYG GGGYGGGRRE GGYGGGGGGY GGGDRYNDRS SRGGGGGGSD GNWRN
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.