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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • plastid 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:mitochondrion
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g012010.1.1 Tomato cytosol 53.85 48.51
HORVU1Hr1G037870.1 Barley cytosol 41.76 47.5
ATCG00120.1 Thale cress cytosol 75.82 13.61
Solyc04g071300.1.1 Tomato cytosol, nucleus 1.1 1.02
Solyc06g072540.1.1 Tomato nucleus 1.1 0.93
Solyc03g033440.1.1 Tomato nucleus, plastid 1.1 0.92
Solyc10g044540.1.1 Tomato plastid 1.1 0.34
Solyc07g027010.1.1 Tomato cytosol 0.0 0.0
Solyc08g045710.1.1 Tomato nucleus 0.0 0.0
Solyc11g039980.1.1 Tomato nucleus, plastid 0.0 0.0
TraesCS5A01G207900.1 Wheat mitochondrion 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc11g051170.1.1EnsemblPlantsGene:Solyc11g051170.1Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0005488
GO:GO:0005524InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:P-loop_NTPaseKEGG:00190+3.6.3.14KEGG:00195+3.6.3.14PANTHER:PTHR42875
PFAM:PF00006SEG:segSUPFAM:SSF52540UniParc:UPI000276AA8AUniProt:K4D8S7MapMan:35.1
Description
No Description!
Coordinates
chr11:+:17769329..17769833
Molecular Weight (calculated)
10074.3 Da
IEP (calculated)
4.890
GRAVY (calculated)
0.252
Length
91 amino acids
Sequence
(BLAST)
1: MCMILNQQGQ NVICVYVAIG QKVSSVVQVV TTLQERGAIE YTIVVAETAD SPSTLQYLAP CIGAALAEYF MYRERHTLII YDDLSKQAQA K
Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)
001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
Arabidopsis Description
ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.