Factsheet for Solyc10g044540.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 20363867
plastid: 22908117
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072540.1.1	Tomato	nucleus	19.11	51.85
Solyc04g071300.1.1	Tomato	cytosol, nucleus	15.7	46.94
Solyc07g027010.1.1	Tomato	cytosol	5.46	22.22
Solyc11g039980.1.1	Tomato	nucleus, plastid	12.97	22.09
KRH27381	Soybean	cytosol, endoplasmic reticulum, plasma membrane	33.11	19.02
KRH07855	Soybean	cytosol	24.23	17.57
Solyc03g033440.1.1	Tomato	nucleus, plastid	6.14	16.51
HORVU1Hr1G037870.1	Barley	cytosol	4.44	16.25
Solyc02g012010.1.1	Tomato	cytosol	3.41	9.9
Solyc11g051170.1.1	Tomato	nucleus	0.34	1.1
TraesCS5A01G207900.1	Wheat	mitochondrion	0.68	0.88
Solyc08g045710.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:1.1.9.1.2	Gene3D:2.40.30.20	Gene3D:3.40.50.300	InterPro:ATP_synth_asu-like_sf
InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0032559	GO:GO:0045261	GO:GO:0046034
GO:GO:0046933	GO:GO:0099132	GO:GO:1902600	InterPro:IPR023366	UniProt:K4CZH8	InterPro:P-loop_NTPase
PANTHER:PTHR42875	SUPFAM:SSF50615	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g044540.1	EnsemblPlants:Solyc10g044540.1.1	UniParc:UPI000276B1D2

Description

No Description!

Coordinates

chr10:-:26801137..26803077

Molecular Weight (calculated)

32914.1 Da

IEP (calculated)

9.665

GRAVY (calculated)

-0.045

Length

293 amino acids

Sequence
(BLAST)

001: MKNVTDTFIS LGHYLSARIF GFNTDILATN PINLSVVLGV LIFLERECVR VVYFKNRLDQ KTVPFPIISR KEREINQIPQ RVFQQALRGA LGTLNSCLNN
101: ELHLRTISVL FFFQKRIKII LERIEQYNRE VKIVNTSTVL QVGDDISRIH GLDEVMMGGG LLIQEGSSIK ATGRNAQILV SETYLGRVVN SMAKPIDGRG
201: EISASEFRLI EYPAPGLILR HSIYETWSMR KIIRDRQTGK KAVATDTILN QQGQNVICVY IAIGKNNVFF GPVSNYFTGE GSDGIHYCGS QNG

Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)

001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV

Arabidopsis Description

ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.