Factsheet for Solyc08g045710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G492000.1	Wheat	mitochondrion, peroxisome	58.82	8.7
PGSC0003DMT400057252	Potato	extracellular	38.24	4.89
TraesCS1B01G412900.1	Wheat	cytosol	35.29	4.17
TraesCS3A01G383800.1	Wheat	cytosol	35.29	4.17
TraesCSU01G147900.1	Wheat	cytosol	35.29	4.17
TraesCS1D01G193400.1	Wheat	cytosol	35.29	4.14
TraesCS1A01G113000.1	Wheat	cytosol	32.35	3.79
PGSC0003DMT400035968	Potato	cytosol, mitochondrion, nucleus	0.0	0.0
Solyc02g012010.1.1	Tomato	cytosol	0.0	0.0
Solyc03g033440.1.1	Tomato	nucleus, plastid	0.0	0.0
Solyc04g071300.1.1	Tomato	cytosol, nucleus	0.0	0.0
Solyc06g072540.1.1	Tomato	nucleus	0.0	0.0
Solyc07g027010.1.1	Tomato	cytosol	0.0	0.0
Solyc10g044540.1.1	Tomato	plastid	0.0	0.0
Solyc11g039980.1.1	Tomato	nucleus, plastid	0.0	0.0
Solyc11g051170.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g045710.1.1	EnsemblPlantsGene:Solyc08g045710.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:ATPase_a/bsu_AS	KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	ScanProsite:PS00152	UniParc:UPI000276C646
UniProt:K4CKC6	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr8:+:17120542..17120847

Molecular Weight (calculated)

3727.7 Da

IEP (calculated)

12.510

GRAVY (calculated)

0.368

Length

34 amino acids

Sequence
(BLAST)

1: MATIYLRGIR PAINVGLSVS RVGSAAQVKW RWLG

Best Arabidopsis Sequence Match ( ATMG01190.1 )
(BLAST)

001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI

Arabidopsis Description

ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.