Factsheet for Solyc03g033440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g039980.1.1	Tomato	nucleus, plastid	46.79	29.65
Solyc06g072540.1.1	Tomato	nucleus	29.36	29.63
Solyc07g027010.1.1	Tomato	cytosol	10.09	15.28
Solyc04g071300.1.1	Tomato	cytosol, nucleus	8.26	9.18
TraesCS1D01G070400.1	Wheat	cytosol	30.28	8.21
TraesCS5D01G011000.1	Wheat	cytosol	28.44	7.99
TraesCS5D01G459400.1	Wheat	cytosol	30.28	7.82
TraesCSU01G174100.1	Wheat	cytosol	30.28	7.78
TraesCS7B01G395800.1	Wheat	cytosol	30.28	7.71
TraesCS5D01G458900.1	Wheat	plastid	31.19	6.75
CAA33993	Rice	plasma membrane, plastid	31.19	6.71
Bra041120.1-P	Field mustard	cytosol	30.28	6.55
HORVU4Hr1G045340.3	Barley	cytosol	30.28	6.55
AGP50752	Barley	cytosol	30.28	6.55
HORVU6Hr1G049170.4	Barley	plastid	30.28	6.51
TraesCS1D01G181000.1	Wheat	cytosol	28.44	6.15
Solyc10g044540.1.1	Tomato	plastid	16.51	6.14
Solyc02g012010.1.1	Tomato	cytosol	4.59	4.95
KRH04726	Soybean	cytosol	5.5	4.14
TraesCSU01G234000.1	Wheat	cytosol	3.67	1.4
TraesCS5A01G207900.1	Wheat	mitochondrion	2.75	1.33
Solyc11g051170.1.1	Tomato	nucleus	0.92	1.1
TraesCS4D01G042900.1	Wheat	cytosol	1.83	1.05
Solyc08g045710.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc03g033440.1.1	EnsemblPlantsGene:Solyc03g033440.1	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	PANTHER:PTHR43089	SUPFAM:SSF52540
UniParc:UPI00027679CC	UniProt:K4BFL6	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3:+:4998027..4998443

Molecular Weight (calculated)

12615.4 Da

IEP (calculated)

9.970

GRAVY (calculated)

-0.436

Length

109 amino acids

Sequence
(BLAST)

001: MDWFLQPFFY VLVFYMTDIR LDLGVPIDGR GALSDHERRR VEVKAPGIIE RKSVHEPMQT GLKAVDSSGS GKGQRKDLIS KQSLERKELL IRFWKKLPTD
101: TPLREAELM

Best Arabidopsis Sequence Match ( ATMG01190.1 )
(BLAST)

001: MELSPRAAEL TNLFESRIRN FYANFQVDEI GRVVSVGDGI AQVYGLNEIQ AGEMVLFANG VKGMALNLEN ENVGIVVFGG DTAIKEGDLV KRTGSIVDVP
101: AGKAMLGRVV DAMGVPIDGK GALSDHEQRR VEVKAPGILE RKSVHEPMQT GLKAVDSLVP IGRGQRELLI GGRQTGKTTI AIDTILNQKQ INSRATSESE
201: TMYCVYVAIG QKRSTVGQLI QTLEEANALE YSILVAATAS DPAPLQFLAP YSGCAMGEYF RDNGMHALII YDDLSKQAVA YRQMSLLLRR PPGREAFPGD
301: VFYLHSRLLE RAAKRSDQTG AGSLTALPVI ETQAGDVSAY IPTNVISITD GQICLETELF YRGIRPAINV GLSVSRVGSA AQLKAMKQVC GSSKLELAQY
401: REVAAFAQFG SDLDAATQAL LNRGARLTEV PKQPQYAPLP IEKQILVIYA AVNGFCDRMP LDRISQYEKA IPNSVKPELL QALKGGLTNE RKMEPDAFLK
501: ERALALI

Arabidopsis Description

ATP1ATP synthase subunit alpha [Source:UniProtKB/TrEMBL;Acc:G1C2Z0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.