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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
vacuole: 18557835
nucleus: 24133045
plastid: 27126603
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
extracellular: 28232208
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 27126603 doi
Y Wang, K Ji, S Shen, H Chen
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G459400.1 Wheat cytosol 81.66 98.1
AGP50752 Barley cytosol 97.44 98.02
TraesCSU01G234000.1 Wheat cytosol 55.23 97.9
Bra041120.1-P Field mustard cytosol 97.24 97.82
HORVU4Hr1G045340.3 Barley cytosol 97.24 97.82
HORVU6Hr1G049170.4 Barley plastid 97.44 97.44
TraesCS5D01G011000.1 Wheat cytosol 74.36 97.16
TraesCS5D01G458900.1 Wheat plastid 96.25 96.83
TraesCS7B01G395800.1 Wheat cytosol 81.66 96.73
TraesCS1D01G181000.1 Wheat cytosol 94.67 95.24
TraesCS4D01G042900.1 Wheat cytosol 35.31 93.72
TraesCS1D01G070400.1 Wheat cytosol 72.58 91.54
TraesCS5A01G207900.1 Wheat mitochondrion 22.49 50.44
BAC19899 Rice nucleus, plasma membrane 50.49 50.29
KRH04726 Soybean cytosol 11.83 41.38
Solyc03g033440.1.1 Tomato nucleus, plastid 6.71 31.19
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.1Gene3D:1.20.150.20Gene3D:2.40.30.20Gene3D:3.40.50.300
EntrezGene:3131390ProteinID:AAS46118.1ProteinID:AJC99310.1ProteinID:AJC99399.1InterPro:ATP_synth_F1_aInterPro:ATP_synth_F1_asu
InterPro:ATP_synth_asu-like_sfInterPro:ATP_synth_asu_CInterPro:ATP_synth_asu_C_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_a/bsu_ASEnsemblPlants:CAA33993EnsemblPlantsGene:CAA33993ProteinID:CAA33993ProteinID:CAA33993.1ProteinID:CAE05898.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139
GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015986
GO:GO:0016020GO:GO:0016787GO:GO:0032559GO:GO:0045261GO:GO:0046034GO:GO:0046933
GO:GO:0099132GO:GO:1902600InterPro:IPR023366InterPro:IPR038376HAMAP:MF_01346RefSeq:NP_039380.1
InterPro:P-loop_NTPaseUniProt:P0C2Z6PFAM:PF00006PFAM:PF00306PFAM:PF02874PIRSF:PIRSF039088
ScanProsite:PS00152PANTHER:PTHR42875MetaCyc:PWY-7219UniProt:Q7DNB0Reactome:R-HSA-1268020Reactome:R-HSA-163210
Reactome:R-HSA-8949613SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR00962UniParc:UPI0000126402
SEG:seg:::::
Description
atpAATPase alpha subunit
Coordinates
chrPt:+:34210..35733
Molecular Weight (calculated)
55668.4 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.074
Length
507 amino acids
Sequence
(BLAST)
001: MATLRVDEIH KILRERIEQY NRKVGIENIG RVVQVGDGIA RIIGLGEIMS GELVEFAEGT RGIALNLESK NVGIVLMGDG LMIQEGSFVK ATGRIAQIPV
101: SEAYLGRVIN ALAKPIDGRG EIVASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQKGQ DVICVYVAIG
201: QRASSVAQVV TTFHEEGAME YTIVVAEMAD SPATLQYLAP YTGAALAEYF MYRERHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLNSLLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKSKLELAQF AELQAFAQFA
401: SALDKTSQNQ LARGRRLREL LKQSQANPLP VEEQIATIYI GTRGYLDSLE IGQVKKFLDE LRKHLKDTKP QFQEIISSSK TFTEEAEILL KEAIQEQLER
501: FSLQEQT
Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)
001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV
Arabidopsis Description
ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.