Factsheet for TraesCS5D01G458900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 16595579
plastid: 18071923
plastid: 18419817
plastid: 22056444
plastid: 22160430
plastid: 22736107
golgi: 25769308
unclear: 25769308
plastid: 28542341

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50752	Barley	cytosol	98.41	98.41
Bra041120.1-P	Field mustard	cytosol	98.21	98.21
HORVU4Hr1G045340.3	Barley	cytosol	98.21	98.21
TraesCS7B01G395800.1	Wheat	cytosol	83.13	97.9
TraesCS5D01G459400.1	Wheat	cytosol	81.94	97.87
HORVU6Hr1G049170.4	Barley	plastid	98.41	97.83
TraesCSU01G174100.1	Wheat	cytosol	81.35	96.7
TraesCS5D01G011000.1	Wheat	cytosol	74.4	96.65
CAA33993	Rice	plasma membrane, plastid	96.83	96.25
TraesCS1D01G181000.1	Wheat	cytosol	96.23	96.23
TraesCS4D01G042900.1	Wheat	cytosol	36.11	95.29
TraesCS1D01G070400.1	Wheat	cytosol	72.82	91.29
TraesCS1D01G193400.1	Wheat	cytosol	48.21	83.79
TraesCS2D01G089900.1	Wheat	golgi	47.02	50.32
TraesCS1D01G137400.1	Wheat	cytosol, mitochondrion, plastid	34.72	50.29
TraesCS1D01G196100.1	Wheat	cytosol	26.79	49.45
TraesCS4D01G279700.1	Wheat	cytosol	12.7	48.85
TraesCS4D01G137800.1	Wheat	cytosol	49.01	48.53
TraesCS1D01G193600.1	Wheat	cytosol	49.6	47.35
TraesCS2D01G230100.1	Wheat	cytosol	47.82	47.35
TraesCS3D01G226800.1	Wheat	cytosol	46.43	46.8
TraesCS5D01G079500.1	Wheat	golgi	20.04	46.12
TraesCS6D01G226200.1	Wheat	mitochondrion	19.84	45.87
KRH04726	Soybean	cytosol	11.9	41.38
TraesCS5D01G079600.1	Wheat	cytosol	19.84	38.31
Solyc03g033440.1.1	Tomato	nucleus, plastid	6.75	31.19
TraesCS2D01G492000.1	Wheat	mitochondrion, peroxisome	10.52	23.04

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:1.1.9.2.1	Gene3D:1.20.150.20	Gene3D:2.40.30.20	Gene3D:3.40.50.300
InterPro:ATP_synth_F1_a	InterPro:ATP_synth_F1_asu	InterPro:ATP_synth_asu-like_sf	InterPro:ATP_synth_asu_C	InterPro:ATP_synth_asu_C_sf	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_a/bsu_AS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0016020	GO:GO:0016787	GO:GO:0032559	GO:GO:0045261
GO:GO:0046034	GO:GO:0046933	GO:GO:1902600	InterPro:IPR023366	InterPro:IPR038376	HAMAP:MF_01346
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF00306	PFAM:PF02874	ScanProsite:PS00152	PANTHER:PTHR42875
SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR00962	EnsemblPlantsGene:TraesCS5D01G458900	EnsemblPlants:TraesCS5D01G458900.1
TIGR:cd01132	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:503315316..503316830

Molecular Weight (calculated)

55391.1 Da

IEP (calculated)

7.684

GRAVY (calculated)

-0.077

Length

504 amino acids

Sequence
(BLAST)

001: MATLRVNDIH KILRERIEQY NRKVGIENIG RVVQVGDGIA RIIGLGEIMS GELLEFAEGT RGIALNLESK NVGIVLMGDG LMIQEGSFVK ATGRIAQIPV
101: SEAYLGRVVN ALAKPIDGKG EIIASESRLI ESPAPSIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTSKTTVA TDTILNQKGQ GVICVYVAIG
201: QRASSVAQVV TTFHEEGAME YTIVVAEMAD SPATLQYLAP YTGAALAEYF MYRERHTFII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLNSLLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKSKLELAQF AELQAFAQFA
401: SALDKTSQNQ LARGRRLREL LKQSQANPLP VEEQIATIYT GTRGYLDSLE IEQVNKFLDE LRKHLKDTKP QFQEIISSSK TFTKQAEILL KEAIQEQLER
501: FSLQ

Best Arabidopsis Sequence Match ( ATCG00120.1 )
(BLAST)

001: MVTIRADEIS NIIRERIEQY NREVTIVNTG TVLQVGDGIA RIYGLDEVMA GELVEFEEGT IGIALNLESN NVGVVLMGDG LMIQEGSSVK ATGKIAQIPV
101: SEAYLGRVIN ALANPIDGRG KISASESRLI ESPAPGIISR RSVYEPLQTG LIAIDSMIPI GRGQRELIIG DRQTGKTAVA TDTILNQQGQ NVICVYVAIG
201: QKASSVAQVV TSLQERGAME YTIVVAETAD SPATLQYLAP YTGAALAEYF MYREQHTLII YDDLSKQAQA YRQMSLLLRR PPGREAYPGD VFYLHSRLLE
301: RAAKLSSQLG EGSMTALPIV ETQSGDVSAY IPTNVISITD GQIFLSADLF NAGIRPAINV GISVSRVGSA AQIKAMKQVA GKLKLELAQF AELEAFSQFS
401: SDLDKATQNQ LARGQRLREL LKQSQSAPLT VEEQIMTIYT GTNGYLDGLE IGQVRKFLVQ LRTYLKTNKP QFQEIIASTK TLTAEAESFL KEGIQEQLER
501: FLLQEKV

Arabidopsis Description

ATPAATP synthase subunit alpha, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.